PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008240414.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 183aa    MW: 21073.5 Da    PI: 7.7684
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008240414.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF451.4e-141548134
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdae 34
                    krien+  r vtfskRr g+ KKA+EL +LC+ae
  XP_008240414.1 15 KRIENQDDRLVTFSKRRSGVNKKASELATLCGAE 48
                    79******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.82748IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-12757IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-16848IPR002100Transcription factor, MADS-box
CDDcd001201.13E-19848No hitNo description
PRINTSPR004048.5E-12929IPR002100Transcription factor, MADS-box
PfamPF003195.6E-141648IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-122944IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MEGRKTKGRQ KIEMKRIENQ DDRLVTFSKR RSGVNKKASE LATLCGAEHH DYDQNHDNID  60
DDIMNLDAVD RSRHTIVEAY RQVRIDEMNK KHNELVSELE VERERGKALQ QRMKAKAKEI  120
SSSIEAAGSS SSSSSSKSRL QDWWEAPFEE LDLKGLKQLH ASFQHLRNDL HPALTCLNNL  180
NPH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008240414.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008240414.11e-134PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLM5WC391e-100M5WC39_PRUPE; Uncharacterized protein
STRINGXP_008240414.11e-133(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.17e-15AGAMOUS-like 57