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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008236216.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 275aa MW: 29927.9 Da PI: 6.7828 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68.4 | 7e-22 | 16 | 62 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 en+s qvtfskRr g++KKA+EL++LC+ae+a+i+fs+ k++ + XP_008236216.1 16 MENDSHLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFCF 62 69**************************************9998766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.7E-29 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.366 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.81E-32 | 7 | 75 | No hit | No description |
SuperFamily | SSF55455 | 7.72E-26 | 7 | 87 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-17 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-23 | 15 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-17 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-17 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MVKKTRGRQK VDMVKMENDS HLQVTFSKRR SGLFKKASEL CTLCGAEIAI IVFSPGKKVF 60 CFGHPGIETL LDRFEGTVPR QILNSETQKL IDGYRTAGLC EITDELTRVL EVLEEERKWG 120 DVLTQSMKTN KEGKWWQGPV EEMELDQLEA LKASLLELKS KVADEAKLRL SAAESANLAH 180 NPNFLVGSSS SSAAAQNASP VHNNFFVGSS SSCAAAGPSG LQGLVNPDIN NVLFNFNGND 240 HVMQAPHQPN NVGFNGNPNA MPLSGWNPNL GGGFL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008236216.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008236216.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 6e-59 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | M5VIK8 | 0.0 | M5VIK8_PRUPE; MADS-box protein 20 | ||||
STRING | XP_008236216.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF22866 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-45 | AGAMOUS-like 62 |
Publications ? help Back to Top | |||
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