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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_008236215.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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| Family | M-type_MADS | ||||||||
| Protein Properties | Length: 478aa MW: 51484.7 Da PI: 4.5311 | ||||||||
| Description | M-type_MADS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | SRF-TF | 63.7 | 1.9e-20 | 16 | 58 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
en++n qvtfskRr+g++KKA+ELS+LC++e +i+fs+ k
XP_008236215.1 16 MENETNLQVTFSKRRAGLFKKASELSTLCGTELGLIVFSPGKK 58
69*************************************9765 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50066 | 23.436 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 2.2E-29 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 4.79E-33 | 7 | 75 | No hit | No description |
| SuperFamily | SSF55455 | 1.03E-25 | 7 | 89 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 5.0E-17 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 4.7E-22 | 15 | 62 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 5.0E-17 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 5.0E-17 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 478 aa Download sequence Send to blast |
MPRICRGRQK LQMVKMENET NLQVTFSKRR AGLFKKASEL STLCGTELGL IVFSPGKKAF 60 CFGHPSIEEV LDKYEGRTSR QPLNHDMQQI AEACSHATTN ELNAELTQVM ERIEGERKRG 120 EELTQLLKAS QAECGLEGPV EELDLDRMEI LRASLMQLRS KVADQAKQKL AAAKTANPPH 180 NPNVYAGSSS SSAAAQSANP AHNNFFVGSS SSSAAAQSAN PSHNNFFVGS SSSSVAAQSA 240 NPAHNNFFVG SSSSSAAAGP SGLQGLANPE INNVGFNFNG NDFVMQAPDQ PNNFGFNFNG 300 AEPVLQAPDQ PNTLGFNFNG AEPVMQSPPD QPNTLGFNFN GAEPVMQSPP DQPNYLGFNF 360 NGAEPVMQAA PDQPNYLGFN FNGPYQHNLG FNFNGPDQPN NLGFNFNGAE PVMQAPLDQP 420 NNLGFNFNGP DQPNNLGFNF NGAESVMQAP PDQPNNVEFN GDPMFLSDWN PNLGGDFL |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1egw_A | 3e-14 | 7 | 74 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
| 1egw_B | 3e-14 | 7 | 74 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
| 1egw_C | 3e-14 | 7 | 74 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
| 1egw_D | 3e-14 | 7 | 74 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
| 3kov_A | 4e-14 | 7 | 74 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3kov_B | 4e-14 | 7 | 74 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3kov_I | 4e-14 | 7 | 74 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3kov_J | 4e-14 | 7 | 74 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3mu6_A | 3e-14 | 7 | 74 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3mu6_B | 3e-14 | 7 | 74 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3mu6_C | 3e-14 | 7 | 74 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3mu6_D | 3e-14 | 7 | 74 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3p57_A | 4e-14 | 7 | 74 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3p57_B | 4e-14 | 7 | 74 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3p57_C | 4e-14 | 7 | 74 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3p57_D | 4e-14 | 7 | 74 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3p57_I | 4e-14 | 7 | 74 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3p57_J | 4e-14 | 7 | 74 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 6bz1_A | 5e-14 | 7 | 74 | 2 | 69 | MEF2 CHIMERA |
| 6bz1_B | 5e-14 | 7 | 74 | 2 | 69 | MEF2 CHIMERA |
| Search in ModeBase | ||||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | XP_008236215.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_008236215.1 | 0.0 | PREDICTED: MADS-box transcription factor 29-like | ||||
| TrEMBL | A0A251N0P3 | 0.0 | A0A251N0P3_PRUPE; Uncharacterized protein | ||||
| STRING | XP_008236215.1 | 0.0 | (Prunus mume) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF39868 | 2 | 2 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G60440.1 | 3e-40 | AGAMOUS-like 62 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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