PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008234997.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family CO-like
Protein Properties Length: 383aa    MW: 42559.4 Da    PI: 6.4474
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008234997.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.98.6e-082064240
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                    ++r C+ +++  + l+C+ ++  lC +C  e H+       Ht++
  XP_008234997.1 20 QKRLCDYCGSSMALLYCRADSAKLCFSCDREVHSAnqlfskHTRS 64
                    7899******99*********************667888888875 PP
2zf-B_box29.31.8e-0965107441
        zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                       C+ ++  ++++fC++ ++ lC++C  e+H +      H+++p
  XP_008234997.1  65 LLCDACDGSPASIFCTTESSVLCQNCDWESH-NlssssvHDRRP 107
                     57*****************************.558888898877 PP
3CCT62.99.8e-22339381143
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                     Re al+RYkeK+ktR++eK+irYesRK++AesR R+KGrF+k 
  XP_008234997.1 339 RETALSRYKEKKKTRRYEKHIRYESRKVRAESRTRIKGRFAKM 381
                     99***************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.5661966IPR000315B-box-type zinc finger
SMARTSM003363.4E-161966IPR000315B-box-type zinc finger
PfamPF006431.5E-62064IPR000315B-box-type zinc finger
CDDcd000215.75E-72266No hitNo description
PROSITE profilePS5011910.83662108IPR000315B-box-type zinc finger
PfamPF006431.6E-765107IPR000315B-box-type zinc finger
CDDcd000217.89E-566108No hitNo description
SMARTSM003360.2267108IPR000315B-box-type zinc finger
PROSITE profilePS5101714.753339381IPR010402CCT domain
PfamPF062035.0E-16339381IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MNGSSRNEEA EAPQPEREHQ KRLCDYCGSS MALLYCRADS AKLCFSCDRE VHSANQLFSK  60
HTRSLLCDAC DGSPASIFCT TESSVLCQNC DWESHNLSSS SVHDRRPLEG FSGCPCLNEL  120
LTVVGFENMD KKALLLGDES GGGGGGGDGF LGCGVDGSFD LDDGFSDFLV WDTPSVVSLD  180
DLIVSNPAYK FQAMGVPPLP KNRNAACGRH KEEIFRQLRV LVKSEPNLFS ENVDVKPLKS  240
LASEQNMQQG SLFTGFEHDA EPTVFPAYEA HDFQYNDCGT AEKRESSPKT FIRSYLQECC  300
VVPDKHSHND GHGHGGQMNS EASSAFPKVA AHELSSQNRE TALSRYKEKK KTRRYEKHIR  360
YESRKVRAES RTRIKGRFAK MDH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008234997.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008234997.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13
TrEMBLM5VM630.0M5VM63_PRUPE; Uncharacterized protein
STRINGXP_008234997.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70553145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.11e-83B-box type zinc finger protein with CCT domain