PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008230340.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family CO-like
Protein Properties Length: 386aa    MW: 42708.3 Da    PI: 5.0497
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008230340.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.35.8e-071757438
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                    r+C+++ +   + +C+ ++ +lC  C  ++H        H+
  XP_008230340.1 17 RVCDTCRSAACTVYCRADSAYLCSGCDATIHAAnrvasrHE 57
                    79******99*********************5556666676 PP
2zf-B_box30.67.1e-1059104342
        zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                      ++C+ +e+ ++ + C+ +   lC  C   +H+       H++vp+
  XP_008230340.1  59 VWVCEACEQAPAAFLCKADAASLCTACDADIHSAnplarrHQRVPI 104
                     689*****************************66899999**9997 PP
3CCT69.87e-24317360144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  XP_008230340.1 317 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 360
                     9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.6371461IPR000315B-box-type zinc finger
SMARTSM003361.4E-71461IPR000315B-box-type zinc finger
CDDcd000217.17E-81761No hitNo description
PROSITE profilePS5011911.24957104IPR000315B-box-type zinc finger
PfamPF006436.9E-858104IPR000315B-box-type zinc finger
CDDcd000211.50E-960104No hitNo description
SMARTSM003363.2E-1062104IPR000315B-box-type zinc finger
PROSITE profilePS5101716.648317359IPR010402CCT domain
PfamPF062037.6E-18317359IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MLKEESNGAA TTNNWARVCD TCRSAACTVY CRADSAYLCS GCDATIHAAN RVASRHERVW  60
VCEACEQAPA AFLCKADAAS LCTACDADIH SANPLARRHQ RVPILPISGC LYGPQATDPG  120
GIEVGSAAAE TEDGFLSQEG DETIDEEDED EAASWLLLNP MKNNNNNCNN NNNQSNGFFF  180
GVEVDEYLDL VEYNSSCGDQ NQFTDHHQHN QQQEQQQQHY GVPVPHKNYG GDSVVPVQMQ  240
KQSFHQLGLE YESSKAAYSY NGSLSNTVSV SSMDVGVVPD STMSDISISH PRTPKGTIDL  300
FSGPPIQMPS QLSPLDREAR VLRYREKKKT RKFEKTIRYA SRKAYAETRP RIKGRFAKRT  360
EMEVEVDQMF STTLMAENGY GIVPSF
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008230340.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008230340.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 2
SwissprotQ965021e-147COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A314URX20.0A0A314URX2_PRUYE; Zinc finger protein CONSTANS-LIKE 2
STRINGXP_008230340.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38273352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.11e-132CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]