PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008229773.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family CO-like
Protein Properties Length: 418aa    MW: 45174.3 Da    PI: 5.7037
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008229773.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.25.2e-06444539
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    +C+ +++++   +C+++  +lC +C  + H+       H++
  XP_008229773.1  4 ICDFCGDQRSMVYCRSDAACLCLSCDRNVHSAnalsrrHSR 44
                    7*****************************65677777766 PP
2zf-B_box24.26.8e-084689441
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
                      C++++++++   C++ ++ lC++C   +H g       H++++
  XP_008229773.1 46 LLCERCNSQPALVRCTEERVSLCQNCDWMGH-GtstsasaHKRQT 89
                    57*****************************.5578888888765 PP
3CCT59.41.3e-20359402144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R +a++RYkeK+k RkF+K++rY+sRKa+A+ R+RvKGrF k+ 
  XP_008229773.1 359 RSNAVMRYKEKKKARKFDKRVRYASRKARADVRKRVKGRFIKAG 402
                     899*************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.684147IPR000315B-box-type zinc finger
CDDcd000213.07E-7447No hitNo description
SMARTSM003363.1E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501199.0014390IPR000315B-box-type zinc finger
CDDcd000211.93E-54790No hitNo description
SMARTSM003361.54890IPR000315B-box-type zinc finger
PfamPF062038.2E-16359401IPR010402CCT domain
PROSITE profilePS5101715.289359401IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MGYICDFCGD QRSMVYCRSD AACLCLSCDR NVHSANALSR RHSRTLLCER CNSQPALVRC  60
TEERVSLCQN CDWMGHGTST SASAHKRQTL NCYSGCPSAS ELSSIWSFVL DLPAAGESAC  120
EQEMGLMSIA ENSTGSAWSP PESNTKQNAS GTVEVNGVRS VDKSSVLVGS SSVPELNPAT  180
HVVGQQAGSE NATLPKLFCH GTKGPAIPED DDLYDDFDMD EMDLNLENYE ELFGVSLNHS  240
EELFKNGGID SLFGAKNMSR CNSNYQDVGA AEGSSVGLVN AIQPACSNAA SADSVMSTKT  300
DPIICFPAKQ AQSNLSFSGV TGESSAGDCQ DCGASSTLLM GEPPWCPPCP ESSMQSANRS  360
NAVMRYKEKK KARKFDKRVR YASRKARADV RKRVKGRFIK AGEAYDYDPL NQARTRSY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008229773.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1891711e-100KF189171.1 Frangula alnus subsp. alnus clone Contig18771 polymorphic genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008229772.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_008229773.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9SSE51e-159COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLM5X5380.0M5X538_PRUPE; Uncharacterized protein
STRINGXP_008229772.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-118CONSTANS-like 9