PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008222351.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family CO-like
Protein Properties Length: 489aa    MW: 53105.2 Da    PI: 6.322
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008222351.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.35.6e-071251437
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                      C+ + ++++ l+C+ ++  lC  C ++ H+       H
  XP_008222351.1 12 VPCDFCTDQPAVLYCKADSAKLCLFCDQHVHSAnllsrkH 51
                    57***************************99555565556 PP
2zf-B_box22.42.6e-075499342
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     ++C+++ +++++  C +++  lC++C    H +      H+++pl
  XP_008222351.1 54 SQICDNCASEPVSVRCSTDNLVLCHECDWDAHGScsvsaaHDRTPL 99
                    689*************************999954888888888775 PP
3CCT64.72.6e-22441484144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R +a+lRYkeK+ktR+++K+irYesRKa+A++R+RvKGrFvk++
  XP_008222351.1 441 RGNAMLRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKAT 484
                     7789**************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.1E-13956IPR000315B-box-type zinc finger
PROSITE profilePS501199.328956IPR000315B-box-type zinc finger
CDDcd000219.90E-81256No hitNo description
PfamPF006431.5E-51353IPR000315B-box-type zinc finger
PROSITE profilePS501199.9975299IPR000315B-box-type zinc finger
CDDcd000211.64E-75699No hitNo description
SMARTSM003362.25799IPR000315B-box-type zinc finger
PROSITE profilePS5101714.872441483IPR010402CCT domain
PfamPF062033.1E-16441483IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MASPKSRSGE GVPCDFCTDQ PAVLYCKADS AKLCLFCDQH VHSANLLSRK HVRSQICDNC  60
ASEPVSVRCS TDNLVLCHEC DWDAHGSCSV SAAHDRTPLD GFSGCPSALQ LASLLGLDLH  120
DKNLPGRPDP QLQNWDMGMP SLDSSWSGMG LQDLMVPNHN QNGVVYPNDE LMVKRQSGGG  180
ISGKQKQGIQ KQLVELLKRD LDGGGGGGGG GGGENLVVPR TPTSSSWQED NGNGNVEGLE  240
PLDLGNRNGG VDGVVASAAT SQPLLQRQAP FTSLLMMPED NRGIVDGDML WNSNPHGQSS  300
QIWDFHLGRS RDHEESGPLE VTYGSNDSGF MIKNFGELMK ETSLTDTKMF RDMYQMNCPV  360
GHDDIKFNNN SNNPAPSQGP ATSESNNIPV GRPSLGSAFG EDKGSGASTD LNFMEQSFLM  420
RGDSLRTVGT KADMELLAQN RGNAMLRYKE KKKTRRYDKH IRYESRKARA DTRKRVKGRF  480
VKATEAPDG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008222351.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008222351.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 15
TrEMBLM5XDL70.0M5XDL7_PRUPE; Uncharacterized protein
STRINGXP_008222351.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47372843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.22e-99B-box type zinc finger protein with CCT domain