PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220621.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family CO-like
Protein Properties Length: 343aa    MW: 38017.3 Da    PI: 5.2897
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220621.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box29.21.9e-09436436
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                    + C+ +++  ++lfC+ ++ +lC +C +++H  
  XP_008220621.1  4 KLCDSCKSATATLFCRADSAFLCVNCDSKIHAA 36
                    58*****************************55 PP
2zf-B_box27.37.5e-094691342
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     + C+ +e+ +++  C+ ++  lC +C + +H+       H++v++
  XP_008220621.1 46 VWLCEVCEQAPAHVTCKADDAALCVTCDQDIHSAnplsrrHERVSV 91
                    679*****************************66888889998875 PP
3CCT69.96.6e-24282325144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  XP_008220621.1 282 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 325
                     9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.893148IPR000315B-box-type zinc finger
SMARTSM003361.4E-15148IPR000315B-box-type zinc finger
PfamPF006431.0E-6443IPR000315B-box-type zinc finger
CDDcd000211.49E-9548No hitNo description
PROSITE profilePS5011910.2964491IPR000315B-box-type zinc finger
PfamPF006435.7E-74691IPR000315B-box-type zinc finger
CDDcd000217.28E-94791No hitNo description
SMARTSM003361.4E-104991IPR000315B-box-type zinc finger
PfamPF062035.1E-18282324IPR010402CCT domain
PROSITE profilePS5101716.787282324IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MASKLCDSCK SATATLFCRA DSAFLCVNCD SKIHAANKLA SRHARVWLCE VCEQAPAHVT  60
CKADDAALCV TCDQDIHSAN PLSRRHERVS VTPFYDSANS AANSAPVVKS VVNFLDDRYF  120
SDVDGQDAET EVSREEAEAA SWLLPNPKAM ENPDLNSGEY FLPEMDPYLD LDYGNVDPKL  180
EDAQEQNSCG TDGVVPVQSK SVQPQLVNDH SFEIDFSAAS KPYVYGFHAQ CLSQSVSSSS  240
MDVSVVPDGN TTMTDVSDPY TKSMSSAVES THQAVQISSA DREARVLRYR EKRKNRKFEK  300
TIRYASRKAY AETRPRIKGR FAKRTEVEIE AERLCRYGVV PSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008220621.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9393030.0EU939303.1 Prunus persica CONSTANS-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220621.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 4
SwissprotQ940T91e-142COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLB5THI20.0B5THI2_PRUPE; CONSTANS-like protein
STRINGXP_008220621.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-130CONSTANS-like 4