PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220456.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family TALE
Protein Properties Length: 569aa    MW: 63443.7 Da    PI: 6.9196
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220456.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.81.8e-084865241854
                     HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     +F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  XP_008220456.1 486 MFQNflHPYPKDAEKHVLAVKSGLTRNQVSNWFINARVR 524
                     5887779******************************88 PP
2BELL77.42.1e-25360429171
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                     ++qe++ kk+kLl+ll+++d+ Y+q+v++++tv+s+F+a+++ ++ ++++++Al++iS  +++L+++i+ +
  XP_008220456.1 360 QKQEIKTKKSKLLTLLQMLDDCYNQCVDEIHTVVSAFHAATETDP-HIHARFALQTISVLYKNLRERISTH 429
                     579******************************************.**********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.2E-27300428IPR006563POX domain
PfamPF075263.1E-26305427IPR006563POX domain
PROSITE profilePS5007110.965465528IPR001356Homeobox domain
SMARTSM003891.4E-5468532IPR001356Homeobox domain
CDDcd000862.44E-10468529No hitNo description
SuperFamilySSF466893.43E-15470537IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-25471534IPR009057Homeodomain-like
PfamPF059208.4E-15485524IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MMDNQMYNVP TDLTARNSVV MDGIVPHTTM NSLVQSYSFD LNHQNHGMAL VPVLSSFPGE  60
PVMHSHSEFN GTNGAGIVES NPFVTSQRRH NVRDSSFISS SFADNTVFEA TPHSAASLAT  120
LLAAKGSLQE NLNNLAISGT PVSSSEAYTS NDCSNNSNSL FATSMNCGYD EILGSISSQW  180
EINKYAAPSE LGERTSVRTG FQPFSPTGNL DPNGWLSSNG ENVMTYHSYS SCKFSNELAL  240
TLATSSPAIV GGVDIRNQCS DIGSSGMAHP SLNQSRFGSS EQNSCNSEEL SLSFGSYKPP  300
QLSQVICGSR YLHVVQEILF DIASYSLENL DQSSFSSARI MSENADSDGR FEVHKDPALQ  360
KQEIKTKKSK LLTLLQMLDD CYNQCVDEIH TVVSAFHAAT ETDPHIHARF ALQTISVLYK  420
NLRERISTHF LAMTANSNPA SPTESERSFE IHKQLALQHL KKKEHQIWRP QRGLPERSVS  480
VLRAWMFQNF LHPYPKDAEK HVLAVKSGLT RNQVSNWFIN ARVRLWKPMI EEMYSEMNRR  540
KTRQSDNTER NNRSHHHNIS INHHKFGVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-14474532563Homeobox protein Meis2
3k2a_B3e-14474532563Homeobox protein Meis2
4xrm_A3e-14474532563Homeobox protein Meis2
4xrm_B3e-14474532563Homeobox protein Meis2
4xrs_A2e-14474531158Homeobox protein Meis1
4xrs_B2e-14474531158Homeobox protein Meis1
5bng_A2e-14474532159Homeobox protein Meis2
5bng_B2e-14474532159Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008220456.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220456.10.0PREDICTED: homeobox protein ATH1
SwissprotP487314e-99ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A251RBY80.0A0A251RBY8_PRUPE; Uncharacterized protein
STRINGXP_008220456.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59393249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-86homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]