PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf11133g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | FAR1 | ||||||||
Protein Properties | Length: 336aa MW: 37884.1 Da PI: 6.2442 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 26.9 | 1.6e-08 | 86 | 162 | 1 | 78 |
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwev 78 +fY+++Ak+ GFs++k++ kk+ ++ + it r++ C k gk+++ +++ k++ + + C+ +l+ +++ d+ + + Peinf101Scf11133g00001.1 86 DFYQDHAKKHGFSITKRSCKKQsSEYDLITGRRLSCHKAGKPARYQTS--KKEFEGRWAQFICDPRLRENQWLDDIYSI 162 6**************99998875777889*************998877..66667777777777777766666666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.7E-6 | 86 | 162 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MQSFMDVEES SSNSQAGPGN TASVLSQVLG VHQDDSLFNN RSNSSMAGEN NDPNVATGEG 60 PGINPRAPAG GPTVGMKFPS LEAMVDFYQD HAKKHGFSIT KRSCKKQSSE YDLITGRRLS 120 CHKAGKPARY QTSKKEFEGR WAQFICDPRL RENQWLDDIY SIRSQWVPVY LTDTFWAGMR 180 STQRSESMHA FFDQFITSRT NLLTFVMQYE VALKTKLDKE SKEEESSKNT RLFSVTGSQW 240 EEQLRAGLTR NIYDMHRKQI QDSIGCNFVG FNVQDEIETF SVSDTGMGLN YAGTEYIMTV 300 TGWPVFGLHL QAVQHSWDYM QAHNSRGEIS PNAGIE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7498 | 2 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-20 | FAR1-related sequence 5 |