PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf10063g00004.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 499aa MW: 57594.5 Da PI: 9.0441

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf10063g00004.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.2	2.8e-23	57	143	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY +YA++ GFsvr+ + +ks++ ++++ + fvCskeg+r ++ k ++r++ +tr gCk l v+k+++g+ + +l+++H Peinf101Scf10063g00004.1 57 NFYLDYAHRNGFSVRRGRVTKSRKYKSVIGQVFVCSKEGFRPKKYFK---NNRPQDVTREGCKVLLYVSKKEEGTLAIRRLVSDH 138 6**************************************998877...999**************************** PP FAR1 86 nHela 90 nHela Peinf101Scf10063g00004.1 139 NHELA 143 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-20	57	143	IPR004330	FAR1 DNA binding domain
Pfam	PF04434	8.2E-7	252	288	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.534	252	288	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.9E-4	263	290	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence Send to blast
MEVSNSDDQH LEGGEVTLEE IESDTDETTQ TVPDLGVENR KEPYIGMELS SLNDAFNFYL 60 DYAHRNGFSV RRGRVTKSRK YKSVIGQVFV CSKEGFRPKK YFKNNRPQDV TREGCKVLLY 120 VSKKEEGTLA IRRLVSDHNH ELATPKKSQE AQKNLIDLLD DSGVRPGKIA SAIDARYDKI 180 REKEFKTKSS FPIFKTLYPM EAEAAKVYTR KIFNLFQDEL VDSQKFVYET IEVKDGMHIH 240 KVHEFERPKP AYIVSLDLAL RTAVCSCHKF EFMGILCSHV LMIFIKKNIH SLPNCYFLDR 300 WTRNATKEKV DDYPNETKKL RPALWFSNIM MHSIGLSERA TRSEKHYQLA QLRLLQLCEE 360 LDELPYEFEK DCAKGAQVSE SNLELNSSEQ SHKITLLDPP RAATKGRPRS LRMKSPLESI 420 RKTQKSSSQR QKGQRKNTKI KSKGISLNSD VDATQKSTAL TLNRFDESSF EFIPTKSSQF 480 LSNKIEDSEH QIRQKHEEI

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence Send to blast

MEVSNSDDQH LEGGEVTLEE IESDTDETTQ TVPDLGVENR KEPYIGMELS SLNDAFNFYL  60
DYAHRNGFSV RRGRVTKSRK YKSVIGQVFV CSKEGFRPKK YFKNNRPQDV TREGCKVLLY  120
VSKKEEGTLA IRRLVSDHNH ELATPKKSQE AQKNLIDLLD DSGVRPGKIA SAIDARYDKI  180
REKEFKTKSS FPIFKTLYPM EAEAAKVYTR KIFNLFQDEL VDSQKFVYET IEVKDGMHIH  240
KVHEFERPKP AYIVSLDLAL RTAVCSCHKF EFMGILCSHV LMIFIKKNIH SLPNCYFLDR  300
WTRNATKEKV DDYPNETKKL RPALWFSNIM MHSIGLSERA TRSEKHYQLA QLRLLQLCEE  360
LDELPYEFEK DCAKGAQVSE SNLELNSSEQ SHKITLLDPP RAATKGRPRS LRMKSPLESI  420
RKTQKSSSQR QKGQRKNTKI KSKGISLNSD VDATQKSTAL TLNRFDESSF EFIPTKSSQF  480
LSNKIEDSEH QIRQKHEEI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025883762.1	1e-115	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025886302.1	1e-112	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2G3CXF4	1e-151	A0A2G3CXF4_CAPCH; Uncharacterized protein
STRING	Solyc01g110070.1.1	1e-112	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA645	8	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	9e-26	FAR1-related sequence 3