PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf03544g00012.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family FAR1
Protein Properties Length: 424aa    MW: 47897.9 Da    PI: 7.7545
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf03544g00012.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.92.5e-2153128190
                      FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                               +fYn YA++vGF++r+ + ++s+ +g++++r+fvCskeg++++              +rtgC a ++v+k ++gkw+++++++eH
  Peinf101Scf03544g00012.1  53 EFYNLYATKVGFRIRIGQLYRSRVDGSVVSRRFVCSKEGFQTT--------------SRTGCPAFIRVQKVDSGKWVLANIKKEH 123
                               6***************************************976..............589************************* PP

                      FAR1  86 nHela 90 
                               nHel 
  Peinf101Scf03544g00012.1 124 NHELE 128
                               ***96 PP
2FAR167.53.3e-21202277190
                      FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                               +fY++YA ++GF+vr+ +  +sk++g+it+r+fvCskeg++++              +r+gC a ++++++++g+w v+++++eH
  Peinf101Scf03544g00012.1 202 EFYHTYAANTGFRVRIGQLFRSKNDGSITSRRFVCSKEGHQHP--------------SRVGCGAFMRIQRQETGRWLVDRCQNEH 272
                               6**************************************9998..............4899************************ PP

                      FAR1  86 nHela 90 
                               nHel 
  Peinf101Scf03544g00012.1 273 NHELD 277
                               ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.6E-1753128IPR004330FAR1 DNA binding domain
PfamPF031016.7E-17202278IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MSREELGNTM TVRANPAGLA IVKTNDLRDD DEEESRLEPN VGLEFDSAED AQEFYNLYAT  60
KVGFRIRIGQ LYRSRVDGSV VSRRFVCSKE GFQTTSRTGC PAFIRVQKVD SGKWVLANIK  120
KEHNHELEHP GEICPSRIQR KIIPSPKSSV VVSTRTGLRS IDEDSPSGII DLKRLKKEKV  180
DGEPTGEPYK GLEFISAGEA YEFYHTYAAN TGFRVRIGQL FRSKNDGSIT SRRFVCSKEG  240
HQHPSRVGCG AFMRIQRQET GRWLVDRCQN EHNHELDPAS DASGGVSVAL KGFKEEASSV  300
LENMDIVESN GGLSLVTRGR ENQSRKLYTI TMFKVFQKEL LECYNYVGIK INVEGAISRY  360
LDAKYGILRD VDSGGTSQDY NALMLWSLRE EARNYIEAGT ASLERYKLAF EIMQEGRRNL  420
CWQN
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755223e-65HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015056325.10.0protein FAR1-RELATED SEQUENCE 12-like
RefseqXP_015056326.10.0protein FAR1-RELATED SEQUENCE 12-like
RefseqXP_015056328.10.0protein FAR1-RELATED SEQUENCE 12-like
RefseqXP_027768235.10.0protein FAR1-RELATED SEQUENCE 12-like
SwissprotQ9M8J31e-105FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBLA0A3Q7JGE10.0A0A3Q7JGE1_SOLLC; Uncharacterized protein
STRINGSolyc10g084220.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73472130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.17e-91FAR1-related sequence 7
Publications ? help Back to Top
  1. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]