PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf03187g00011.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family FAR1
Protein Properties Length: 587aa    MW: 68181.5 Da    PI: 8.1471
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf03187g00011.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR136.91.2e-11611401090
                      FAR1  10 vGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                                GFs+rk++s+ s         +fvC ++g++ ++kk+t ++++ r++ r+gC+ k+ ++ke     ++w v ++++  +Hel 
  Peinf101Scf03187g00011.1  61 NGFSIRKERSRLS----PQLAGDFVCHRSGFAPTRKKSTGEHHQDRKSVRCGCDEKMYLSKEVvdrVSQWFVVQFSNVRSHELL 140
                               69******99999....34679***************************************98767789************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.7E-961140IPR004330FAR1 DNA binding domain
PfamPF105513.5E-13276360IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MVSLPSKNVW MRRQECPCGD WKCYISYERE AEEATLASQL AKNDLGSIKA MVTPYVGMIT  60
NGFSIRKERS RLSPQLAGDF VCHRSGFAPT RKKSTGEHHQ DRKSVRCGCD EKMYLSKEVV  120
DRVSQWFVVQ FSNVRSHELL EDDQVRLLPA YRKIHEMDQK HILLPAKAGF PIHRIVKVLE  180
LKKGIYGGQL SFLERNVRDF VQNRKKVVQE NDVLLTEKRE TDIMDLLEAC KAANEVDAYL  240
FYDVTLDEND KVENISCSYG DVVHAYNMFG DIVYLYSSIT YDMLYGAWLG ISNHRKVIFF  300
GCILLQNETP GSFAWALHAF IHFMEGKLRQ TIIIDIESGL RDAIRSELPN IKHIISIWSI  360
LPKTFSWFSL LLGTRHTEFR EFDVLYYLDS PEDFEYQWNQ MISRFGLNSD KHISLLFSLW  420
VSWATSYIRC CFHAQMLSES FMKFVDAFLK GFFNTQTCLR SFLSRYKRRR RRHFLVSAGS  480
FLACSQGNSF KCDKFFVTQI SGVLSCYKIQ ANEDMQYMHL KTCLPMEGHA QNVLTPFTFC  540
TLQHELVSAM CYATTEMANE SYLVRHFKKT DGECLVYQKM NRSTVPT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1466471KRRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027147807.10.0putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A2R6Q9S90.0A0A2R6Q9S9_ACTCH; Protein FAR1-RELATED SEQUENCE 10
STRINGXP_009374865.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75321927
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10