PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf02890g00016.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 648aa MW: 73152.3 Da PI: 8.7682

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf02890g00016.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	47.8	4.8e-15	86	168	1	91
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 +fY+++Ak+ GFs++k++ kk+ ++ + it r++ C k gk+++ +++ ++++Cka + ++ + + wev+++ Peinf101Scf02890g00016.1 86 DFYQDHAKKHGFSITKRSCKKQsSEYDLITGRRLSCHKAGKPARYQTS----------KKVDCKAGIYATLCSdRTSWEVKSVTV 160 6************99998875777889********9986655..........9*********9999***** PP FAR1 84 eHnHelap 91 eHnH+l p Peinf101Scf02890g00016.1 161 EHNHDLEP 168 ***975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-11	86	168	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.435	417	455	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0042	430	457	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 648 aa Download sequence Send to blast
MQSFMDVEES SSNSQAGPGN TASVLSQVLG VHQDDSLFDN RSNSGMAGEN NDPNVATGEG 60 PGINPRAPAG GPTVGMKFPS LEAMVDFYQD HAKKHGFSIT KRSCKKQSSE YDLITGRRLS 120 CHKAGKPARY QTSKKVDCKA GIYATLCSDR TSWEVKSVTV EHNHDLEPRL SWLMAAHRKV 180 TPALKRDLVA ADTAGVRPCR SFRTMEIMNG GTENMGCLPR DCRNFINQHR RMRLKHGDAE 240 ELKNFFERMH SADGRFEFEG RWAQFICDPR LRENQWLDDI YSIRSQWVPV YLTDTFWAGM 300 RSTQRSESMH AFFDQFITSR TNLLTFVMQY EVALKTKLDK ELKEEESSKN TRLFSVTGSQ 360 WEEQLRAGLT RNIYDMHRKQ IQDSIGCNFV GFNVQDEVET FSVSDTGMGL NYAGTEYIMT 420 VVYKRDGQYL DCTCKLFNTR GIICRHMILV VKYHQMPELN ERYIMRRWRG DISRPHLWAY 480 VPEGYPQMSD EFKRLHGLKG IFYKCAERAI QSDKLTRKLG LELVASFGKP NNDDPVPDDI 540 HDVEDHRSDV PILDPRFLRS KGRPCLIRVR NNWNRRQRTY GTSRRGWGRS RAGDAGAGRG 600 SGGVDASNGN GGVDASRGNA AVDATTACVV NATGGNSGVD ARRGNCTI

Sequence ? help Back to Top

Protein Sequence Length: 648 aa Download sequence Send to blast

MQSFMDVEES SSNSQAGPGN TASVLSQVLG VHQDDSLFDN RSNSGMAGEN NDPNVATGEG  60
PGINPRAPAG GPTVGMKFPS LEAMVDFYQD HAKKHGFSIT KRSCKKQSSE YDLITGRRLS  120
CHKAGKPARY QTSKKVDCKA GIYATLCSDR TSWEVKSVTV EHNHDLEPRL SWLMAAHRKV  180
TPALKRDLVA ADTAGVRPCR SFRTMEIMNG GTENMGCLPR DCRNFINQHR RMRLKHGDAE  240
ELKNFFERMH SADGRFEFEG RWAQFICDPR LRENQWLDDI YSIRSQWVPV YLTDTFWAGM  300
RSTQRSESMH AFFDQFITSR TNLLTFVMQY EVALKTKLDK ELKEEESSKN TRLFSVTGSQ  360
WEEQLRAGLT RNIYDMHRKQ IQDSIGCNFV GFNVQDEVET FSVSDTGMGL NYAGTEYIMT  420
VVYKRDGQYL DCTCKLFNTR GIICRHMILV VKYHQMPELN ERYIMRRWRG DISRPHLWAY  480
VPEGYPQMSD EFKRLHGLKG IFYKCAERAI QSDKLTRKLG LELVASFGKP NNDDPVPDDI  540
HDVEDHRSDV PILDPRFLRS KGRPCLIRVR NNWNRRQRTY GTSRRGWGRS RAGDAGAGRG  600
SGGVDASNGN GGVDASRGNA AVDATTACVV NATGGNSGVD ARRGNCTI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7498	2	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	6e-27	FAR1-related sequence 6