PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02778g00053.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C3H
Protein Properties Length: 507aa    MW: 57139.5 Da    PI: 5.639
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02778g00053.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.93e-12174195526
                               --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                C+++++tG Ck+G++CkF+H+
  Peinf101Scf02778g00053.1 174 DCSYYMKTGMCKFGPNCKFNHP 195
                               7********************8 PP
2zf-CCCH28.91.9e-09219243327
                               S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                               + +C++++ +G CkyG  Ck++Hg+
  Peinf101Scf02778g00053.1 219 QIECKYYLTSGGCKYGKACKYNHGR 243
                               568********************96 PP
3zf-CCCH40.93.5e-13264288226
                               -S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                               ++++C++++rtG CkyG++C+F+H+
  Peinf101Scf02778g00053.1 264 GEKECPYYMRTGSCKYGSNCRFHHP 288
                               7899********************9 PP
4zf-CCCH27.55.4e-09400426127
                               --S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                               ++++ C+ff +tG Cky ++CkF+H++
  Peinf101Scf02778g00053.1 400 PGQPDCSFFIKTGDCKYKSNCKFHHPK 426
                               5789*********************96 PP
5zf-CCCH36.21e-11449473327
                               S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                               +  C+f++r+G+Ck+G+ CkF H++
  Peinf101Scf02778g00053.1 449 QTVCSFYSRYGICKFGPACKFDHPE 473
                               678********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.1E-6169196IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.14169197IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6170196IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-9174195IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-5175194IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-4216243IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.53216244IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-7220243IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5221244IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5222244IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-7262289IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.624262290IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-7264289IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-11264288IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5268287IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-4399426IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.145399427IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-5401426IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-5404427IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-6446473IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.131446474IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-5447474IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-9449473IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-4451473IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MEQSIEQHQQ IQIQSSEDHH IEQLGFDSKT SSLQSDPNSQ NPNQNPPKSD QNDDDTDEMA  60
MQIIGEELRN LVLNQALNEE KEKEDLYHLD HEENGKRLEN VSWNDEEPGN VSEYGYEHYD  120
DQDENRSGSG NGNENENDGE KENGYGGDLK EGGYNGNNRI KRKYSYPLRP DAQDCSYYMK  180
TGMCKFGPNC KFNHPSRRKT QGPKEKGKQK EESQERPGQI ECKYYLTSGG CKYGKACKYN  240
HGRERGSISP IVEFNFLGLP IRPGEKECPY YMRTGSCKYG SNCRFHHPDP TTVAGADPSS  300
GYNNVGAVPV QAASRPAASS WSSPRTLNDT ASYVPMMYSP NQGMPSPNSE WNGYQAPVYA  360
TSENRLPTPP AFAMNNPTTR TNFYPRPQQP LLVEEYPERP GQPDCSFFIK TGDCKYKSNC  420
KFHHPKSSRI SKGNSSILND KGLPVRPDQT VCSFYSRYGI CKFGPACKFD HPENYVGSAS  480
STESGFDRPR ESQMSLGWQG QELEVDH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754428e-48HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016508693.10.0PREDICTED: zinc finger CCCH domain-containing protein 67-like isoform X3
TrEMBLA0A1S4D5S60.0A0A1S4D5S6_TOBAC; zinc finger CCCH domain-containing protein 67-like isoform X3
STRINGXP_009613170.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44682343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-105C3H family protein