PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02728g00009.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family FAR1
Protein Properties Length: 688aa    MW: 78996.9 Da    PI: 7.4452
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02728g00009.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.46.5e-2063155290
                      FAR1   2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkle 82 
                               +Y ++Ak+vGFsvr+++   s ++   i+kr++vC + g+++++k  +++++r r+++r++C+ak+ + ke      +w v  ++
  Peinf101Scf02728g00009.1  63 CYVSFAKKVGFSVRRDHYLGSeEHPMGIYKRDYVCHRAGSPRSQKVVEKERQRDRKSSRCNCNAKMSIAKELidgIPRWIVVYFD 147
                               7****************9888455567*****************999999999****************998845569******* PP

                      FAR1  83 leHnHela 90 
                               + HnHel 
  Peinf101Scf02728g00009.1 148 NVHNHELL 155
                               ******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.0E-1763155IPR004330FAR1 DNA binding domain
PfamPF105515.3E-29277370IPR018289MULE transposase domain
PROSITE profilePS509669.483491524IPR007527Zinc finger, SWIM-type
SMARTSM005751.3E-5499526IPR006564Zinc finger, PMZ-type
PfamPF044341.1E-7499523IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MDSTVGLSRS HCPCGDNGCY INGDIIVGST EIFNEELAQE NATGNEDLHK GKVFSTHEEA  60
YNCYVSFAKK VGFSVRRDHY LGSEEHPMGI YKRDYVCHRA GSPRSQKVVE KERQRDRKSS  120
RCNCNAKMSI AKELIDGIPR WIVVYFDNVH NHELLNEKEV RFLPAYRNID IIDQKWITLL  180
LKAGCSMSLS RRVLELEKGI DVGQLSFTEK DIGNFLQLES STNIEYDALE LLKVCKSLKD  240
KDVDFQYDFT VDACQRLEHI IWAFGDSTHA YEIFGDVVVF DTTYRLNRYE MPLGVWIGVN  300
NHGNSVFFGC VLLRNEKASS FSWALKSFVR LMKGKHPQTI LTDQDLGLTE AIANELPHTK  360
HAFCIWHITS KFSTWFSFPL GSSHSESINA YLKKFLHART SLKEFVEQVG AAVSIRNYAA  420
EEAIMRQKYY NPQIKTFMPM EKNASKVLTP FAFKLLQNKM ILSVEYGLFS NGDDSYIVRH  480
YSKIDGGRLV YWNPLEEVVQ CSCQEFEFSG ILCRHCIRVL SSHNYFMLPD KYFLPRWRQE  540
NSLVLKFTHT TNPPNDANEF QSLQSIIRDL SLESMKSKGR LDCAKKELER VLQVVQCLPE  600
NEHIHEEHGQ FIISQTTEHD SSDDDYHVEN PKQSQTKGMK RGKRLVASKL PKSQAAPSQV  660
WDPSLTANMT KRTKNTGIVG SPYFQLWC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009596355.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
TrEMBLA0A396JX520.0A0A396JX52_MEDTR; Putative transcription factor FAR family
STRINGXP_009596355.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7183722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.11e-148FAR1-related sequence 10