PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02372g00007.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family FAR1
Protein Properties Length: 262aa    MW: 29976.6 Da    PI: 6.3812
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02372g00007.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR193.42.8e-2998185291
                      FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                               fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++  k  r+raetr+gC+a++ v+k ++gkw+vtk+++eH+
  Peinf101Scf02372g00007.1  98 FYNAYATRVGFIIRVSKLSRSRRDGSAIGRALVCNKEGFRMPDKRE--KIVRQRAETRVGCRAMILVRKVNSGKWVVTKFVKEHT 180
                               ******************************************9988..9************************************ PP

                      FAR1  87 Helap 91 
                               H+l+p
  Peinf101Scf02372g00007.1 181 HPLCP 185
                               ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-2698185IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MVRELVVSTW PGLDFVVDDI DGEEEEGTLV EVRAVDESAV GGSSSEEALH QVLDVKVDDE  60
ISEREVVSLE EAQSLGNSTS DEPYVGQEFE SEAAAHAFYN AYATRVGFII RVSKLSRSRR  120
DGSAIGRALV CNKEGFRMPD KREKIVRQRA ETRVGCRAMI LVRKVNSGKW VVTKFVKEHT  180
HPLCPGKGRR DLIYDQYPNE HDKIRELSQQ LAAEKKRSAT YKRHLEMIFE HIEEHNQSLS  240
KKIQDIVHNV REMESRDQHH HR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015164249.11e-165PREDICTED: protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A0V0HLI01e-165A0A0V0HLI0_SOLCH; Uncharacterized protein
STRINGPGSC0003DMT4000694951e-165(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA115682325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.28e-98FAR1 family protein