PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02288g05013.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family Trihelix
Protein Properties Length: 523aa    MW: 56651.5 Da    PI: 6.6683
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02288g05013.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix56.85.7e-18134220186
                  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                               +W++  + +L+ea+ e+  +l+rg+l++ +Weev++ +  r ++ ++s +qCk+k +nl+kryk ++++ +++   + s++p+f+
  Peinf101Scf02288g05013.1 134 EWSDTAIACLLEAYMEKFVQLNRGNLRGRDWEEVAAMVseRCEKQTKSVEQCKNKVDNLKKRYKLERHRIING-GVTMSHWPWFK 217
                               5*************************************777778899************************99.555669***** PP

                  trihelix  84 qle 86 
                               q+e
  Peinf101Scf02288g05013.1 218 QME 220
                               **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.4E-20132222No hitNo description
Gene3DG3DSA:3.40.1160.104.8E-67268516IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.867277517IPR015963Uridylate kinase, bacteria
SuperFamilySSF536335.89E-52278516IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042546.78E-113280517No hitNo description
PfamPF006964.6E-23281496IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MASCGDDDFS LLADDNPAAV TVTPTTSNPN YHHHSFSHRY KSSSQQIHAP PISACSTKNI  60
SGDDDDDGEG YSDTGFVGVN NPYDNETIND NIKRTDREEN ISDNGTPYSS YKRSKTATSS  120
GGGSGGEYRK DREEWSDTAI ACLLEAYMEK FVQLNRGNLR GRDWEEVAAM VSERCEKQTK  180
SVEQCKNKVD NLKKRYKLER HRIINGGVTM SHWPWFKQME QIVGNSVNLK AVTSEEEKSV  240
VAVTNSGTGR QSKRYGAAVS GPSGQINNIK TKSSMGPRWR RVVLKISGAA LAGAAPNTND  300
PNNLDPKVAM LIAREVSIAC RLGIEVAIVV GGRNFFCGDT WVSTTGLDRC TAYQIGMMAT  360
MMNSILLQSA LEKLGVQTRV QSAFSMPELA EPYNRQRAMR HLEKGRVVIF GGIGAGTGNP  420
LFTTDTAAAL RASEINADAL LKGANVEGVF VCDSRNNNVA AEHISFRELV SGGASPLDLM  480
AVTLCEENAI PVVIFNLHGS GNISRALCGE QVGTLVDQTG MIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nwy_A2e-5727951650279Uridylate kinase
3nwy_B2e-5727951650279Uridylate kinase
3nwy_C2e-5727951650279Uridylate kinase
3nwy_D2e-5727951650279Uridylate kinase
3nwy_E2e-5727951650279Uridylate kinase
3nwy_F2e-5727951650279Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754485e-86HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019250790.10.0PREDICTED: uncharacterized protein LOC109229713
TrEMBLA0A1S4AJN50.0A0A1S4AJN5_TOBAC; uncharacterized protein LOC107798398
TrEMBLA0A1U7YW420.0A0A1U7YW42_NICSY; uncharacterized protein LOC104248417
STRINGXP_009802965.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87282427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein