PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01786g06023.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 443aa MW: 49493.2 Da PI: 8.6233

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01786g06023.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	43.4	1.1e-13	21	67	45	91
FAR1 45 kkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 k++++++ ++r++ ++gCka+++vk++ +gkw+++++++eHnHel p Peinf101Scf01786g06023.1 21 KQQSDDAINPRPSPKIGCKASMHVKRRPEGKWYIHSFVKEHNHELLP 67 233456789***********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.6E-11	21	67	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.571	184	220	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.7E-8	193	218	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.8E-7	195	222	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence Send to blast
MTSLRGGSVL FSGEVDQYGN KQQSDDAINP RPSPKIGCKA SMHVKRRPEG KWYIHSFVKE 60 HNHELLPAQV HFFRSHRNAD PLKNDSKVRR KKMLAVVSKQ YGAYQFSDWY EEEAKANFDA 120 WHEMPELKSP SPFEKQMLLI YTNEIFKKFQ VEVLGAAACH LKKESEDGAS ITYAVKDFDA 180 NQDFMVEWDA SRSDIYCSCH SFEYKGYLCR HAIVVLQMSG VFNIPSKYIL QRWTNAATSR 240 HSISGCLDNV QAKIRCYNDL CRRAIILGEE GSLTQESYNI AVGAIKEALK QCATVNVTFE 300 ANLRSGSSAT VAIQGVDEVS QGNALASREL VPCSKAAQTS KGSKRANPGH ERESNIANKK 360 GKVPLEPEIV NGAQGVFHQM DMPGTLDYPS LYPRFLSTLL RGGDVNKRSV ELLGEIVKGS 420 AAMYNGKEEG GIGLLQRRCC FRN

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence Send to blast

MTSLRGGSVL FSGEVDQYGN KQQSDDAINP RPSPKIGCKA SMHVKRRPEG KWYIHSFVKE  60
HNHELLPAQV HFFRSHRNAD PLKNDSKVRR KKMLAVVSKQ YGAYQFSDWY EEEAKANFDA  120
WHEMPELKSP SPFEKQMLLI YTNEIFKKFQ VEVLGAAACH LKKESEDGAS ITYAVKDFDA  180
NQDFMVEWDA SRSDIYCSCH SFEYKGYLCR HAIVVLQMSG VFNIPSKYIL QRWTNAATSR  240
HSISGCLDNV QAKIRCYNDL CRRAIILGEE GSLTQESYNI AVGAIKEALK QCATVNVTFE  300
ANLRSGSSAT VAIQGVDEVS QGNALASREL VPCSKAAQTS KGSKRANPGH ERESNIANKK  360
GKVPLEPEIV NGAQGVFHQM DMPGTLDYPS LYPRFLSTLL RGGDVNKRSV ELLGEIVKGS  420
AAMYNGKEEG GIGLLQRRCC FRN

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016479978.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 4-like isoform X1
Refseq	XP_016479979.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 4-like isoform X1
Refseq	XP_016479980.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 4-like isoform X1
Swissprot	Q6NQJ7	6e-95	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A1S4ATH3	0.0	A0A1S4ATH3_TOBAC; protein FAR1-RELATED SEQUENCE 4-like isoform X1
STRING	XP_009600660.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA496	21	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.2	2e-97	FAR1-related sequence 4

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]