PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01701g03025.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 447aa MW: 51705.7 Da PI: 9.6723

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01701g03025.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.8	1.4e-26	54	140	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 kfY +YA++ GFsvr+ + +ks+++++i+ ++fvCskeg+r++++ + ++r+r +tr gCk l v+k+++g+w+v +l+++H Peinf101Scf01701g03025.1 54 KFYLDYAHRNGFSVRRGRITKSRKDKSIIGQEFVCSKEGFRRKKNLE---SNRPRDVTREGCKVLLYVSKKEEGNWVVCRLVSKH 135 6***************************************98777...999**************************** PP FAR1 86 nHela 90 nHela Peinf101Scf01701g03025.1 136 NHELA 140 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.3E-24	54	140	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	11.078	228	264	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.7E-6	228	262	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.001	239	266	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MENSNLDEQN IKGVEVRLEE SDMDGPEQAP YVGVENSREP YIGMDFQSLD DSFKFYLDYA 60 HRNGFSVRRG RITKSRKDKS IIGQEFVCSK EGFRRKKNLE SNRPRDVTRE GCKVLLYVSK 120 KEEGNWVVCR LVSKHNHELA SPNNQKFLRS KRKKSEAQKS LIDLLDSSGV RPSKIASDEA 180 AKAYTRKIFG IFQEELILSQ KFVSEKIEVK DGVYTYKVHQ FQRQKPVYIV SLDLENRSAI 240 CSCHKFEFMG ILCRHVLMIF IKKRIHSLPT CYLLDRWTRN ATKEKIDEHQ NGTKILKPSV 300 SWFNNIMMHS IGLSERATRS EKHYLFAHQR LLQLCEELDE LPYESEKDCV SGDQVSAPNI 360 ESNSFEHSQN FTLLDPPRAI NKGRPRSLRM KGSLESTRKT IKGSSLKQKG QSRSTKLKEQ 420 GNKSQQYAES YQGYVENTGY TYPSSFM

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MENSNLDEQN IKGVEVRLEE SDMDGPEQAP YVGVENSREP YIGMDFQSLD DSFKFYLDYA  60
HRNGFSVRRG RITKSRKDKS IIGQEFVCSK EGFRRKKNLE SNRPRDVTRE GCKVLLYVSK  120
KEEGNWVVCR LVSKHNHELA SPNNQKFLRS KRKKSEAQKS LIDLLDSSGV RPSKIASDEA  180
AKAYTRKIFG IFQEELILSQ KFVSEKIEVK DGVYTYKVHQ FQRQKPVYIV SLDLENRSAI  240
CSCHKFEFMG ILCRHVLMIF IKKRIHSLPT CYLLDRWTRN ATKEKIDEHQ NGTKILKPSV  300
SWFNNIMMHS IGLSERATRS EKHYLFAHQR LLQLCEELDE LPYESEKDCV SGDQVSAPNI  360
ESNSFEHSQN FTLLDPPRAI NKGRPRSLRM KGSLESTRKT IKGSSLKQKG QSRSTKLKEQ  420
GNKSQQYAES YQGYVENTGY TYPSSFM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025883762.1	1e-101	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025886302.1	2e-98	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2G3CXF4	1e-103	A0A2G3CXF4_CAPCH; Uncharacterized protein
STRING	Solyc01g110070.1.1	1e-100	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA645	8	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-29	FAR1-related sequence 5