PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01468g09007.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 734aa MW: 85014 Da PI: 6.5727

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01468g09007.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	97.4	1.6e-30	38	129	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtklele 84 fYn+YA++vGFs+r+s+s++s+++g i++r fvC keg+r+ ++k+ +++ +r+r+ tr+gCka l vk +++g+w+v++++++ Peinf101Scf01468g09007.1 38 FYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKAALSVKIHDSGTWVVSNFVKD 122 9*************************************998888545677889************************** PP FAR1 85 HnHelap 91 HnH+l+p Peinf101Scf01468g09007.1 123 HNHDLVP 129 **986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.9E-29	38	129	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.0E-31	250	342	IPR018289	MULE transposase domain
Pfam	PF04434	1.0E-11	518	564	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.263	530	566	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.2E-9	541	568	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 734 aa Download sequence Send to blast
MENEVMEFDD DDDDVDHYFD LEPYDGMEFE SEEAAKAFYN SYARRVGFST RVSSSRRSRK 60 DGAIIQRSFV CAKEGFRNLN EKRTKDREIK RPRTITRVGC KAALSVKIHD SGTWVVSNFV 120 KDHNHDLVPP DQVHCLRSHR QISGPAKTLI DTLQAAGMGP RRIMSALIKE YGGISKVGFT 180 EVDCRNYMRN NRQRSLEGDI QLLLDYLKQM HSHNPGFFYA VQGDDDQCMG NVFWADSKAR 240 DNYTYFGDTV TFDTTYRSNR YRLPFAPFTG VNHHGQPVLF GSAFLINESE ASFVWLFNTW 300 LAAMSGQPPL SVTTDHDAVI RSAIMQVFPD TRHRFCKWHI FKKCQEKLSH VFLEHPNFEA 360 DFHKCVNLTE STEEFESCWL SLVDKYDLRD HDWLQAIYLD RRQWVPVYLR DAFFGEMSIT 420 QRSDSMNSYF DGYVNASTNL NQFFKLYEKA MESRIEKEVK ADYDTMNTFP VLRTPSPMEK 480 QASEVYTRKL FMRFQEELVG TLTFMANKVE DDGLVTTYQV EKFGDDHRAY YVRFNVLEMK 540 ATCSCQMFEF SGLLCRHVLA VFRVTNVLTL PSHYILKRWS RSAKSSVALE DRVADVINYY 600 LESHTVRYNI LRHEAFKFVE EGAESIDSYT VAMAALEDAS KKVALAAKRD GRISLVNGHC 660 RDNLTRNGVH ANYNIEDEYR NLACPLSEYI ITNFSLVLEA FLLDLLWVKR VYLTGMSVHD 720 HVSVFNWSTG VYTS

Sequence ? help Back to Top

Protein Sequence Length: 734 aa Download sequence Send to blast

MENEVMEFDD DDDDVDHYFD LEPYDGMEFE SEEAAKAFYN SYARRVGFST RVSSSRRSRK  60
DGAIIQRSFV CAKEGFRNLN EKRTKDREIK RPRTITRVGC KAALSVKIHD SGTWVVSNFV  120
KDHNHDLVPP DQVHCLRSHR QISGPAKTLI DTLQAAGMGP RRIMSALIKE YGGISKVGFT  180
EVDCRNYMRN NRQRSLEGDI QLLLDYLKQM HSHNPGFFYA VQGDDDQCMG NVFWADSKAR  240
DNYTYFGDTV TFDTTYRSNR YRLPFAPFTG VNHHGQPVLF GSAFLINESE ASFVWLFNTW  300
LAAMSGQPPL SVTTDHDAVI RSAIMQVFPD TRHRFCKWHI FKKCQEKLSH VFLEHPNFEA  360
DFHKCVNLTE STEEFESCWL SLVDKYDLRD HDWLQAIYLD RRQWVPVYLR DAFFGEMSIT  420
QRSDSMNSYF DGYVNASTNL NQFFKLYEKA MESRIEKEVK ADYDTMNTFP VLRTPSPMEK  480
QASEVYTRKL FMRFQEELVG TLTFMANKVE DDGLVTTYQV EKFGDDHRAY YVRFNVLEMK  540
ATCSCQMFEF SGLLCRHVLA VFRVTNVLTL PSHYILKRWS RSAKSSVALE DRVADVINYY  600
LESHTVRYNI LRHEAFKFVE EGAESIDSYT VAMAALEDAS KKVALAAKRD GRISLVNGHC  660
RDNLTRNGVH ANYNIEDEYR NLACPLSEYI ITNFSLVLEA FLLDLLWVKR VYLTGMSVHD  720
HVSVFNWSTG VYTS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019263777.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Refseq	XP_019263778.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1S3ZA49	0.0	A0A1S3ZA49_TOBAC; protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A1U7V9U1	0.0	A0A1U7V9U1_NICSY; protein FAR1-RELATED SEQUENCE 5
STRING	XP_009758605.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]