PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01189g04043.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 437aa MW: 50533.3 Da PI: 9.466

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01189g04043.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.6	3.2e-26	55	141	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY +YA++ GFsvr+ + +ks+++++++ + fvCskeg+r+++ k ++r++ +tr gCk + v+k++d++w +++l+++H Peinf101Scf01189g04043.1 55 NFYLDYAHRNGFSVRRGRVTKSRKDKSVIGQVFVCSKEGFRSKKYFK---NNRPQDVTREGCKVLIYVSKKEDETWAISRLVSDH 136 6***************************************99877...999**************************** PP FAR1 86 nHela 90 nHela Peinf101Scf01189g04043.1 137 NHELA 141 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-23	55	141	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.93	222	258	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.6E-8	222	257	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.5E-4	233	260	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence Send to blast
MEISNSDDQH INGDTSEEIE SDMEEIMQTV SDLGVENRRE PYIGMEFSSL DDAFNFYLDY 60 AHRNGFSVRR GRVTKSRKDK SVIGQVFVCS KEGFRSKKYF KNNRPQDVTR EGCKVLIYVS 120 KKEDETWAIS RLVSDHNHEL ATPSSQKFLR SKRKKSEAQK NLIDLLDDSG VRPAAKVYTR 180 KIFKIFRDEL IYSQKFVSEK IEVKNGMNIY KVHEFERQKP AYIVSLDLSL RSAVCSCHKF 240 EFMGILCRHV LMVFIKKKIH SLPSHYLLDR WTRNATKEKV DDYPNEAYKL RPSLWFNNIM 300 MHSIGLSERA TRSEKYYQLA HQRLLQLCEE LDELSYDIEE DCVRGAQVSG SNFDLNSFEQ 360 SHITLLDPPR AAAKGRPRSL RMKGTIETTL KTQKNSSQRQ KGQRKSTKSK SKGTSSNSYA 420 EAEQNNVATP LNEAHAM

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence Send to blast

MEISNSDDQH INGDTSEEIE SDMEEIMQTV SDLGVENRRE PYIGMEFSSL DDAFNFYLDY  60
AHRNGFSVRR GRVTKSRKDK SVIGQVFVCS KEGFRSKKYF KNNRPQDVTR EGCKVLIYVS  120
KKEDETWAIS RLVSDHNHEL ATPSSQKFLR SKRKKSEAQK NLIDLLDDSG VRPAAKVYTR  180
KIFKIFRDEL IYSQKFVSEK IEVKNGMNIY KVHEFERQKP AYIVSLDLSL RSAVCSCHKF  240
EFMGILCRHV LMVFIKKKIH SLPSHYLLDR WTRNATKEKV DDYPNEAYKL RPSLWFNNIM  300
MHSIGLSERA TRSEKYYQLA HQRLLQLCEE LDELSYDIEE DCVRGAQVSG SNFDLNSFEQ  360
SHITLLDPPR AAAKGRPRSL RMKGTIETTL KTQKNSSQRQ KGQRKSTKSK SKGTSSNSYA  420
EAEQNNVATP LNEAHAM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025883762.1	2e-95	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025886302.1	2e-92	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2G3CXF4	1e-97	A0A2G3CXF4_CAPCH; Uncharacterized protein
STRING	Solyc01g110070.1.1	1e-94	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA645	8	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-24	FAR1-related sequence 5