PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01172g00012.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 644aa MW: 74658.9 Da PI: 7.5535

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01172g00012.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62	1.8e-19	68	160	2	90
FAR1 2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkle 82 +Y ++Ak++GFsvr+++ s +++ i++r++vC + g+++++k +++++r+r+++r++C+ak+ v ke +w+v + Peinf101Scf01172g00012.1 68 CYVNFAKRIGFSVRRDRYFGStEHHMGIYRRDYVCHRAGSPRPQKVVEKERQRNRKSSRCNCNAKMAVAKEIidgITHWKVVYFG 152 7*************99888556667**************99999999************998856789*** PP FAR1 83 leHnHela 90 + HnHel Peinf101Scf01172g00012.1 153 NVHNHELL 160 ****96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-16	68	160	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.4E-28	282	375	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.903	547	595	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.0E-7	568	594	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.2E-6	570	597	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 644 aa Download sequence Send to blast
MKVSVDSRLD VSRTHCPCGD NECYIHGDIV GGTSERDNEE LRQEDFDIGN TDLHKGKIFN 60 SDDEAYNCYV NFAKRIGFSV RRDRYFGSTE HHMGIYRRDY VCHRAGSPRP QKVVEKERQR 120 NRKSSRCNCN AKMAVAKEII DGITHWKVVY FGNVHNHELL NDKEVKYLPA YRNIEFIDQK 180 RISLLAKAGC SINLIQRVLE LEKGIDVGQL TFTEKDIRNF LQSESSTNIE YDALELLKIC 240 KSLKDEDVDF QYDFTVDACR RLENIVWAFG DSIRAYELFG DVVVFDTTYR LNRYEMPLGV 300 WVGVNNHGNT IFFGCVLLRN EKASSFSWAL KSFLRLMNGK YPQTILTDQD LGLTEAIAHE 360 LPLTKHAFCI WHITSKFSTW FSFVLGSSYL QFKSEFHRLY ELSSVEKFEC GWDKLISEFG 420 LESDRHIKLL YANRASWALP YLKGYFFAGM TTTGRSESIN AYLKRFLHAR TSLKEFVEQV 480 GTAVSIRNQV GEEATMRQKY YNPQIKTLMP MEKHASKVLT PFAFKLLQDE MILSVEYGLF 540 SNNDGSYSVR HYSKTDGGRL VFWNPLEENV KCSCQEFEFS GILCRHSIKV LTAHNYFMLP 600 EKYLLARWRQ ENSLVLKFTH MINPSNEGNG FQSLQSIVRD LTHE

Sequence ? help Back to Top

Protein Sequence Length: 644 aa Download sequence Send to blast

MKVSVDSRLD VSRTHCPCGD NECYIHGDIV GGTSERDNEE LRQEDFDIGN TDLHKGKIFN  60
SDDEAYNCYV NFAKRIGFSV RRDRYFGSTE HHMGIYRRDY VCHRAGSPRP QKVVEKERQR  120
NRKSSRCNCN AKMAVAKEII DGITHWKVVY FGNVHNHELL NDKEVKYLPA YRNIEFIDQK  180
RISLLAKAGC SINLIQRVLE LEKGIDVGQL TFTEKDIRNF LQSESSTNIE YDALELLKIC  240
KSLKDEDVDF QYDFTVDACR RLENIVWAFG DSIRAYELFG DVVVFDTTYR LNRYEMPLGV  300
WVGVNNHGNT IFFGCVLLRN EKASSFSWAL KSFLRLMNGK YPQTILTDQD LGLTEAIAHE  360
LPLTKHAFCI WHITSKFSTW FSFVLGSSYL QFKSEFHRLY ELSSVEKFEC GWDKLISEFG  420
LESDRHIKLL YANRASWALP YLKGYFFAGM TTTGRSESIN AYLKRFLHAR TSLKEFVEQV  480
GTAVSIRNQV GEEATMRQKY YNPQIKTLMP MEKHASKVLT PFAFKLLQDE MILSVEYGLF  540
SNNDGSYSVR HYSKTDGGRL VFWNPLEENV KCSCQEFEFS GILCRHSIKV LTAHNYFMLP  600
EKYLLARWRQ ENSLVLKFTH MINPSNEGNG FQSLQSIVRD LTHE

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016499085.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A1S4CD64	0.0	A0A1S4CD64_TOBAC; protein FAR1-RELATED SEQUENCE 11-like
STRING	XP_008803488.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7183	7	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]