PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01142g01025.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 674aa MW: 76588.5 Da PI: 7.937

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01142g01025.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.4	2e-22	87	170	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 ++Yn YA+evGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++++w++ ++ leH Peinf101Scf01142g01025.1 87 NYYNCYAREVGFRVRVKNSWFKRNSKEKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMMRMRMVDSKRWRILEVTLEH 166 69***************************************9988.....99*************************** PP FAR1 86 nHel 89 nH l Peinf101Scf01142g01025.1 167 NHLL 170 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-19	87	170	IPR004330	FAR1 DNA binding domain
Pfam	PF04005	1.6E-70	350	653	IPR007150	Checkpoint protein Hus1/Mec3

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000077	Biological Process	DNA damage checkpoint
GO:0030896	Cellular Component	checkpoint clamp complex

Sequence ? help Back to Top
Protein Sequence Length: 674 aa Download sequence Send to blast
MLKMEEASVD SDQDVTGQGS GRLQETESDG LDDQNCEQIE SNQLFVQNGG PSESDVLDDQ 60 NGVIDGQKEF VAPAVGMEFE SYDDAYNYYN CYAREVGFRV RVKNSWFKRN SKEKYGAVLC 120 CSSQGFKRIK DVNRLRKETR TGCPAMMRMR MVDSKRWRIL EVTLEHNHLL GTKAYKSIKK 180 TGAGNRKKLD SNCDAEVRTI KLYRALVIDA AWRFMIQRFG VGDHEWLCSL YDERAKWAPV 240 YLKDTFFAGM ATARPNETLT SFFDKYVHKQ TPLKEFLDKY ELALQKKHKE EALADIESRN 300 SNPELKTRCS FELQLSKAYT GGVFKRFQLE VEEMYSCFST TQLHVDGQMF KAFLTDNGVN 360 LLDKRFLPAL DKMGKICYLY LTRDHVFFLH NLLNGDGIQS IAQFRKEALF DEYRISSQNE 420 DRICFTVDLS LLHRALRSII SIYTEFSASH SGVPGGNIAP NRLQIKLVKK LPPHSQQPMP 480 FLTFETKGYK SAVIQDVPIS KPLSRNDVLE LQAALDMAQD LPQTLIRVPD MHQLQNFVDR 540 MKQVGDVLNV SISKYGDLHL QVSTTLITLG AEFRKLLVIG EQAESQTGDQ NLSAQSRSRV 600 ALQRGDAMTV QVSVKHFFKS LQCHLVKPDC AFYGIAQQGG CLTVIFQFFI PGTHQTDKAI 660 SLHCRLPVLD PGSS

Sequence ? help Back to Top

Protein Sequence Length: 674 aa Download sequence Send to blast

MLKMEEASVD SDQDVTGQGS GRLQETESDG LDDQNCEQIE SNQLFVQNGG PSESDVLDDQ  60
NGVIDGQKEF VAPAVGMEFE SYDDAYNYYN CYAREVGFRV RVKNSWFKRN SKEKYGAVLC  120
CSSQGFKRIK DVNRLRKETR TGCPAMMRMR MVDSKRWRIL EVTLEHNHLL GTKAYKSIKK  180
TGAGNRKKLD SNCDAEVRTI KLYRALVIDA AWRFMIQRFG VGDHEWLCSL YDERAKWAPV  240
YLKDTFFAGM ATARPNETLT SFFDKYVHKQ TPLKEFLDKY ELALQKKHKE EALADIESRN  300
SNPELKTRCS FELQLSKAYT GGVFKRFQLE VEEMYSCFST TQLHVDGQMF KAFLTDNGVN  360
LLDKRFLPAL DKMGKICYLY LTRDHVFFLH NLLNGDGIQS IAQFRKEALF DEYRISSQNE  420
DRICFTVDLS LLHRALRSII SIYTEFSASH SGVPGGNIAP NRLQIKLVKK LPPHSQQPMP  480
FLTFETKGYK SAVIQDVPIS KPLSRNDVLE LQAALDMAQD LPQTLIRVPD MHQLQNFVDR  540
MKQVGDVLNV SISKYGDLHL QVSTTLITLG AEFRKLLVIG EQAESQTGDQ NLSAQSRSRV  600
ALQRGDAMTV QVSVKHFFKS LQCHLVKPDC AFYGIAQQGG CLTVIFQFFI PGTHQTDKAI  660
SLHCRLPVLD PGSS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	0.0	HG975442.1 Solanum pennellii chromosome ch03, complete genome.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	9e-65	FAR1-related sequence 6