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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Peinf101Scf01123g09009.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 178aa MW: 20805.5 Da PI: 7.589 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 22.1 | 5.1e-07 | 80 | 120 | 50 | 90 |
FAR1 50 kerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
+ +r+r+etr g k ++ +k++ kwevt+l+++Hn el+
Peinf101Scf01123g09009.1 80 ECNRQREETREGYKVMIYFSKKEARKWEVTRLVSDHNQELT 120
56799********************************9996 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 8.4E-5 | 79 | 120 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 178 aa Download sequence Send to blast |
MLQNKQETSN ILKENIEGVG ASLEELESDM NVMVAEERGE PYNSMDFPSL DIAYEFYLNY 60 AHRSDFSFVQ KKNFIQKGVE CNRQREETRE GYKVMIYFSK KEARKWEVTR LVSDHNQELT 120 SPYNRKFLHS KRKKSEAQKN LIDPLDTSGI RPSKIASEFK TKSLKASLKT LYPMEDEA |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_019068484.1 | 1e-47 | protein FAR1-RELATED SEQUENCE 5 | ||||
| TrEMBL | A0A3Q7EE03 | 1e-43 | A0A3Q7EE03_SOLLC; Uncharacterized protein | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA645 | 8 | 60 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G38180.1 | 4e-13 | FAR1-related sequence 5 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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