PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01109g09006.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family WRKY
Protein Properties Length: 264aa    MW: 29317.3 Da    PI: 7.1493
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01109g09006.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.32.4e-26184237259
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               +Dgy+WrKYGqK vk+s fpr    Ct+++C+vkk+vers edp++v++tYeg+Hnh+
  Peinf101Scf01109g09006.1 184 EDGYRWRKYGQKAVKNSSFPR----CTTQKCSVKKRVERSYEDPSIVITTYEGQHNHH 237
                               8*******************6....********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.9E-28168239IPR003657WRKY domain
SuperFamilySSF1182903.27E-23175239IPR003657WRKY domain
PROSITE profilePS5081124.616178239IPR003657WRKY domain
SMARTSM007742.2E-31183238IPR003657WRKY domain
PfamPF031061.7E-19184237IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MSDNPFYHDY MGTGGINTYP FFGENFSNYE QPPPNIQNPQ QQFIPSSYMS LTECLQHGSM  60
DYNNLSSAFG MSCSSSEVVH PQADQDTSMK SSVSAGESAL NSPLGGTGVE IPRTPNSSIS  120
STSNEAGGEE DSSKSKKHFQ RSKECQGEGD DMSKEVSKAK KKEEKKQKEP RFAFMTKSEV  180
DNLEDGYRWR KYGQKAVKNS SFPRCTTQKC SVKKRVERSY EDPSIVITTY EGQHNHHCPA  240
TLRSNMLSPS FLSSSMPSQP KSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-23173240778Probable WRKY transcription factor 4
2lex_A1e-23173240778Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009766292.11e-131PREDICTED: probable WRKY transcription factor 71
RefseqXP_016432826.11e-131PREDICTED: probable WRKY transcription factor 71
SwissprotQ8VWJ23e-55WRK28_ARATH; WRKY transcription factor 28
TrEMBLA0A1S3WZ641e-129A0A1S3WZ64_TOBAC; probable WRKY transcription factor 71
TrEMBLA0A1U7VE171e-129A0A1U7VE17_NICSY; probable WRKY transcription factor 71
STRINGXP_009766292.11e-130(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14852475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.12e-47WRKY DNA-binding protein 28
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim SH, et al.
    Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis.
    Mol. Cells, 2014. 37(11): p. 833-40
    [PMID:25358503]
  4. Zhao L, et al.
    KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535
    [PMID:29288215]