PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01061g04014.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C3H
Protein Properties Length: 402aa    MW: 43859.4 Da    PI: 8.0476
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01061g04014.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.51.9e-125276327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                              ++ C++++rtGtCk+G++CkF+H++
  Peinf101Scf01061g04014.1 52 EPTCQYYLRTGTCKFGASCKFHHPR 76
                              689********************96 PP
2zf-CCCH37.54e-1296120226
                               -S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                t++C+++++tG+Ck+G +CkF+H+
  Peinf101Scf01061g04014.1  96 ETRECSYYSKTGQCKFGLTCKFHHP 120
                               79**********************9 PP
3zf-CCCH35.12.3e-11252277227
                               -S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                               +++ C+++ +tG Ck+G++C+++H+p
  Peinf101Scf01061g04014.1 252 DQPVCQYYTKTGDCKFGSSCRYHHPP 277
                               6899********************97 PP
4zf-CCCH34.43.8e-11297323127
                               --S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                               +++e+C+f+++ G+Ck+G +CkF H++
  Peinf101Scf01061g04014.1 297 PGMEPCSFYMQRGFCKFGHTCKFDHPM 323
                               689**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.9624977IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-64976IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-65177IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-105276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-55576IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-693122IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-594121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.62494122IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-996120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-497119IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-6250277IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.511250278IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-9252277IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-6252278IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-5255276IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-6296323IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.474296324IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-8297323IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6298326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-5300322IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MAGNESHSVG PETGLEESMM RLGLWDKQVY PERSGVGGLQ LGGIAYPERI GEPTCQYYLR  60
TGTCKFGASC KFHHPRNGGS LSNIQLNIYG YPLRPETREC SYYSKTGQCK FGLTCKFHHP  120
YPAGLSTPAP ARPFYPTVQS LPAPPEEFNS ASTSFRVEKP PHLPGSYVPG AYGPFLLHPG  180
VVTIQNWSTY SGPVSSAVSP GAQPAAGVTS IYGISQLASS TAAFAAPYSP LHSATGPSSS  240
THKEKSFPER PDQPVCQYYT KTGDCKFGSS CRYHHPPDWI ASQTNCTFSS LGLPLRPGME  300
PCSFYMQRGF CKFGHTCKFD HPMGTLQNSP SAASLPDTPT ASYMLGSSFT LAPTSLPEIE  360
GRLLLFYEST FLTEQLKYYS NAFRVWAFTI CSCQVKEVNQ QS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366677.10.0PREDICTED: zinc finger CCCH domain-containing protein 32 isoform X1
RefseqXP_009776613.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X1
RefseqXP_016506824.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X1
SwissprotQ84W911e-128C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A1S4D0M40.0A0A1S4D0M4_TOBAC; zinc finger CCCH domain-containing protein 32-like isoform X1
TrEMBLA0A1U7WD870.0A0A1U7WD87_NICSY; zinc finger CCCH domain-containing protein 32-like isoform X1
TrEMBLM1A3480.0M1A348_SOLTU; Uncharacterized protein
STRINGXP_009776613.10.0(Nicotiana sylvestris)
STRINGPGSC0003DMT4000136470.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66222034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-130C3H family protein