PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01034g03001.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

TCP

Protein Properties

Length: 320aa MW: 36328.7 Da PI: 8.4456

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01034g03001.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	142.5	3.3e-44	40	190	2	133
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssa 70 +gkkdrhski+T++g RdRRvRls+++a++fFdLqd LGfdk+sktieWL+ ++ aikel ++ + Peinf101Scf01034g03001.1 40 TGKKDRHSKICTAQGVRDRRVRLSLHIARKFFDLQDILGFDKASKTIEWLFSKSYDAIKELSENmpqkgyfdegnkinnsN---- 120 79************************************************************88888777664443221.... PP TCP 71 seceaesssssasnsssg..............kaaksaakskksqksaasalnlak.esrakarararertrekmrik 133 + ssss+++s+ + + +s+++ k++ k + + n++k esr kar+rarert+ekm+ k Peinf101Scf01034g03001.1 121 --M----SSSSEGKSHDEslmseceevvsrweE--NSNNEVKEKGKLREIVDNPHKrESRYKARERARERTKEKMMVK 190 ..1....11111111111345566667776432..3333555555566666999999****************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.8E-45	40	188	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	34.883	42	100	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	11.148	169	186	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MEAYPSKAHI SGDTSAVEMS GEAKTSSKKR NLGATPRRRT GKKDRHSKIC TAQGVRDRRV 60 RLSLHIARKF FDLQDILGFD KASKTIEWLF SKSYDAIKEL SENMPQKGYF DEGNKINNSN 120 MSSSSEGKSH DESLMSECEE VVSRWEENSN NEVKEKGKLR EIVDNPHKRE SRYKARERAR 180 ERTKEKMMVK GLEKCKEWYE KNPNNIPDQL GSSSNTSGFL EESNKSNSYN TCSVNQEKGS 240 PHEASSQSLE HQFANSGIID ENYSTTGGID SGNCFMSFPG NWEMINFAPM PNVVQIPYAV 300 WKNYPNGVFG LLILIMVIFF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF274249	0.0	JF274249.1 Petunia x hybrida TCP1 gene, complete cds.
GenBank	JQ400104	0.0	JQ400104.1 Petunia x hybrida putative transcription factor (TCP1) mRNA, complete cds.
GenBank	KR002103	0.0	KR002103.1 Petunia x hybrida TCP transcription factor 1 (TCP1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016574613.1	1e-124	PREDICTED: transcription factor DICHOTOMA-like
TrEMBL	G0ZGI6	0.0	G0ZGI6_PETHY; Putative transcription factor
STRING	PGSC0003DMT400019324	1e-118	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2436	23	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	3e-30	TCP domain protein 12