PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00944g01012.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 540aa MW: 60685.8 Da PI: 9.2521

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00944g01012.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	26.5	2e-08	86	162	1	78
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwev 78 +fY+++Ak+ GFs++k++ kk+ ++ + it r++ C k gk+++ +++ k++ + + C+ +l+ +++ d+ + + Peinf101Scf00944g01012.1 86 DFYQDHAKKHGFSITKRSCKKQsSEYDLITGRRLSCHKAGKPARYQTS--KKEFEGRRAQFICDPRLRENQWLDDIYSI 162 6************99998875777889***********999887..66667777777788777777766666666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.7E-6	86	162	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.435	296	334	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0042	309	336	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence Send to blast
MQSFMDVEES SSNSQAGPGN TASVLSQVLG VHQDDSLFNN RSNSSMAGEN NDPNVATGEG 60 PGINPRAPAG GPTVGMKFPS LEAMVDFYQD HAKKHGFSIT KRSCKKQSSE YDLITGRRLS 120 CHKAGKPARY QTSKKEFEGR RAQFICDPRL RENQWLDDIY SIRSQWVPVY LTDTFWAGMR 180 STQRSESMHA FFDQFITSRT NLLTFVMQYE VALKTKLDKE LKEEESSKNT RLFSVTGSQW 240 EEQLRAGLTR NIYDMHRKQI QDSIGCNFVG FNVQDEVETF SVSDTGMGLN YAGTEYIMTV 300 VYKRDGQYLD CTCKLFNTRG IICRHMILVV KYHQMPELNE RYIMRRWRGD ISRPHLWAYV 360 PEGYPQMSDE FKRLHGLKGI FYKCAEMAIQ SDKLTRKLGL ELVASFDKPN NDDPVPDDIH 420 DVEDHRSDVP ILDPRFLRSK GRPCLIRVRN NWNRRQRTYG TSRRGWGRSR AGDAXRRGRG 480 RSRAGAAGAG RSSGGVDASN GNGGVDASRG NAAVDATTAC VVNATGGNSG VDARRGNCTI

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence Send to blast

MQSFMDVEES SSNSQAGPGN TASVLSQVLG VHQDDSLFNN RSNSSMAGEN NDPNVATGEG  60
PGINPRAPAG GPTVGMKFPS LEAMVDFYQD HAKKHGFSIT KRSCKKQSSE YDLITGRRLS  120
CHKAGKPARY QTSKKEFEGR RAQFICDPRL RENQWLDDIY SIRSQWVPVY LTDTFWAGMR  180
STQRSESMHA FFDQFITSRT NLLTFVMQYE VALKTKLDKE LKEEESSKNT RLFSVTGSQW  240
EEQLRAGLTR NIYDMHRKQI QDSIGCNFVG FNVQDEVETF SVSDTGMGLN YAGTEYIMTV  300
VYKRDGQYLD CTCKLFNTRG IICRHMILVV KYHQMPELNE RYIMRRWRGD ISRPHLWAYV  360
PEGYPQMSDE FKRLHGLKGI FYKCAEMAIQ SDKLTRKLGL ELVASFDKPN NDDPVPDDIH  420
DVEDHRSDVP ILDPRFLRSK GRPCLIRVRN NWNRRQRTYG TSRRGWGRSR AGDAXRRGRG  480
RSRAGAAGAG RSSGGVDASN GNGGVDASRG NAAVDATTAC VVNATGGNSG VDARRGNCTI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7498	2	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-26	FAR1-related sequence 6