PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00914g06021.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 679aa MW: 77702.5 Da PI: 7.8227

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00914g06021.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.2	8.6e-21	62	155	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkl 81 +fY e+Ak++GFs+r+++++ + + t+r fvC + g++ + ++++k +r+r+++r+gC+a ++++k+ +w+vt + Peinf101Scf00914g06021.1 62 EFYAEFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKATNDSKPQRNRKSSRCGCQAYMRISKTVdvgVPEWRVTGF 146 6************9998877356667999************99******************98766779** PP FAR1 82 eleHnHela 90 ++HnHel Peinf101Scf00914g06021.1 147 INHHNHELL 155 *****96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-17	62	155	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.8E-21	278	369	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.705	556	589	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	7.5E-7	559	587	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.3E-6	564	591	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 679 aa Download sequence Send to blast
MSEEAGQMMV LYGEPSDQQS LSLDDTSSTE ESPDQTRLSL ESTNDAIPFI GQRFFNHDAA 60 YEFYAEFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPVKATND SKPQRNRKSS 120 RCGCQAYMRI SKTVDVGVPE WRVTGFINHH NHELLEPSQV RFLPAYRSIS DADKSRILMF 180 AKTGISVQQM MRLIELEKGV EPGYLPFTEK DVRNLLQSFK KVDPEDESID LLRMCRNIKE 240 KDSNFKYDFA LDSSNKLENI AWSYASSIQS YDMFGDAVVF DTTHRLTAFD MPLGIWIGVN 300 NYGMPCFFGC VLLREETLRS YSWALKAFLA FMNGKAPQTI LTDQNMCLKE AIDLEMPTTK 360 HALCIWLIVS KFPSWFNAVL GERYNEWKAE FHRLYNLESM EDFELGWRDM VNSYGLHTNR 420 HISSLFALRS LWALPYLRSH FFAGMTSAFH SKSINAFIQR FLSAQTRLAH FVEQVAVTVD 480 FKDQAGEQQT MQQNLQNICL KTGAPMEAHA AAVLTPFAFC KLQEQLVLAA HYASFQMEDG 540 FLVRHHTKLE GGRKVYWVPR EGIISCSCHQ FEFSGLLCRH ALRVLSTGNC FEIPERYLPH 600 RWRRISTPST KALQNTQNDH SERVQLLQSM VSALVTESAK STERLGIATE NVSILLTRIR 660 EHPICSPGVR ELSSNQRNL

Sequence ? help Back to Top

Protein Sequence Length: 679 aa Download sequence Send to blast

MSEEAGQMMV LYGEPSDQQS LSLDDTSSTE ESPDQTRLSL ESTNDAIPFI GQRFFNHDAA  60
YEFYAEFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPVKATND SKPQRNRKSS  120
RCGCQAYMRI SKTVDVGVPE WRVTGFINHH NHELLEPSQV RFLPAYRSIS DADKSRILMF  180
AKTGISVQQM MRLIELEKGV EPGYLPFTEK DVRNLLQSFK KVDPEDESID LLRMCRNIKE  240
KDSNFKYDFA LDSSNKLENI AWSYASSIQS YDMFGDAVVF DTTHRLTAFD MPLGIWIGVN  300
NYGMPCFFGC VLLREETLRS YSWALKAFLA FMNGKAPQTI LTDQNMCLKE AIDLEMPTTK  360
HALCIWLIVS KFPSWFNAVL GERYNEWKAE FHRLYNLESM EDFELGWRDM VNSYGLHTNR  420
HISSLFALRS LWALPYLRSH FFAGMTSAFH SKSINAFIQR FLSAQTRLAH FVEQVAVTVD  480
FKDQAGEQQT MQQNLQNICL KTGAPMEAHA AAVLTPFAFC KLQEQLVLAA HYASFQMEDG  540
FLVRHHTKLE GGRKVYWVPR EGIISCSCHQ FEFSGLLCRH ALRVLSTGNC FEIPERYLPH  600
RWRRISTPST KALQNTQNDH SERVQLLQSM VSALVTESAK STERLGIATE NVSILLTRIR  660
EHPICSPGVR ELSSNQRNL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975513	0.0	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006349293.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11 isoform X1
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A1S4BBL6	0.0	A0A1S4BBL6_TOBAC; protein FAR1-RELATED SEQUENCE 11-like isoform X1
STRING	XP_009601478.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10896	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]