PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00900g03011.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 371aa MW: 42382.6 Da PI: 9.5783

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00900g03011.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	90	3.2e-28	26	112	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY +YA++ GFsvr+s+ ++s+++++i+ ++fvCskeg+r++++ + ++r+r etr gCk ++ ++k+++g w+vt+l+++H Peinf101Scf00900g03011.1 26 EFYLNYAHRSGFSVRRSRISRSRKDNSIIGQQFVCSKEGFRSKKSLE---SNRQRDETREGCKVMIYLSKKEEGMWMVTRLVSDH 107 6****************************************9877...9999*************************** PP FAR1 86 nHela 90 nHela Peinf101Scf00900g03011.1 108 NHELA 112 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-25	26	112	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MNVTVDEEPR EPYIGMDFPS PDIAFEFYLN YAHRSGFSVR RSRISRSRKD NSIIGQQFVC 60 SKEGFRSKKS LESNRQRDET REGCKVMIYL SKKEEGMWMV TRLVSDHNHE LASPHSKKFL 120 RSKRKKSEAQ KNLIDLLDTS GVRSSKITSK QIHSLPRCYL LDRWTRYATK EKVDILNENP 180 HVNNLEPSAM WYNNIMMHSL GLSERALRSE KHYKYAYQRL LQPSEELDEL PYEFGNDNAC 240 GGQVNGSNIE LNSGEHSQNI TLLDPPCAAT KGRPRFLRRK GGLENSCKAK KSSSQKQTRQ 300 IKSTKKGKGI SSSSCVQLES KSTGTPSSTA PTQQYQPYPE SFYGQNGDCG DVYTTSFTDL 360 MRATSYPYKE D

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MNVTVDEEPR EPYIGMDFPS PDIAFEFYLN YAHRSGFSVR RSRISRSRKD NSIIGQQFVC  60
SKEGFRSKKS LESNRQRDET REGCKVMIYL SKKEEGMWMV TRLVSDHNHE LASPHSKKFL  120
RSKRKKSEAQ KNLIDLLDTS GVRSSKITSK QIHSLPRCYL LDRWTRYATK EKVDILNENP  180
HVNNLEPSAM WYNNIMMHSL GLSERALRSE KHYKYAYQRL LQPSEELDEL PYEFGNDNAC  240
GGQVNGSNIE LNSGEHSQNI TLLDPPCAAT KGRPRFLRRK GGLENSCKAK KSSSQKQTRQ  300
IKSTKKGKGI SSSSCVQLES KSTGTPSSTA PTQQYQPYPE SFYGQNGDCG DVYTTSFTDL  360
MRATSYPYKE D

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025888960.1	2e-76	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A3Q7IDW8	2e-75	A0A3Q7IDW8_SOLLC; Uncharacterized protein
STRING	Solyc01g110070.1.1	2e-78	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-19	FAR1-related sequence 5