PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00740g12014.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 636aa MW: 74312.8 Da PI: 7.0271

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00740g12014.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	33.6	1.3e-10	58	138	2	78
FAR1 2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwev 78 +Y ++Ak+vG+svr ++ s ++ ei+kr++v + g++ ++k +++++r r+++r++C+a++ + e +w v Peinf101Scf00740g12014.1 58 CYVSFAKRVGYSVRHDRYLGSeEHPMEIYKRDYVWHRAGRSYSQKVVEKERQRDRKSSRCNCTARMSIAIELingIPRWIV 138 7************998887577789**********999999999999***********987664423445665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.9E-8	58	129	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.1E-8	266	314	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 636 aa Download sequence Send to blast
GSQEAIVHVV IMVLYYGDVV VESTEIFSED LGQENIDISN RDLHKDKVFT THDEAYNCYV 60 SFAKRVGYSV RHDRYLGSEE HPMEIYKRDY VWHRAGRSYS QKVVEKERQR DRKSSRCNCT 120 ARMSIAIELI NGIPRWIVIT LLAKAGCSIS LVRRVLELEK GVDVGQLSFT EKDIRNFLQL 180 KSSTNIEYDV LELLKVWKSL KDKDIDFQYD FTVDSCQRLE YIIWAFGDST HAYEIFGDVV 240 VFDTTYRLNR YEISVGVWIG VKIMAIMFSL SFIRLMKGKH LQTILTDQDL GLTEAIANEL 300 PHTKHVFCIW HITSKFSTWF SFPLGSRYMQ FKSEFHKIYE LGSIEEFEQQ WDELITKFDL 360 ELDRHIKLLY ANRASWALSY LKGYFFAGMT TTSHSESINA YLKKFLHART SSKDFVEQVG 420 AAVSIRNYAA EEAMMRQKYY NPQIKTFMPI EKNASTVLTL FAFKLLQNEM ILSVEYGLFS 480 NGDDSYIVRH YIKIDGGRFV FGIRYRRHCI RVLSSHNYFM LPDKYFLPRW RKENSLVLKF 540 SHIMNPPNDA NELQSFQSII RDLSLESMKS KGHLNCAKKE LERVLQVVQC LPDNELITEE 600 HRHVTVSQTT EHESSDDDYQ VENPQQSQIK GREEKG

Sequence ? help Back to Top

Protein Sequence Length: 636 aa Download sequence Send to blast

GSQEAIVHVV IMVLYYGDVV VESTEIFSED LGQENIDISN RDLHKDKVFT THDEAYNCYV  60
SFAKRVGYSV RHDRYLGSEE HPMEIYKRDY VWHRAGRSYS QKVVEKERQR DRKSSRCNCT  120
ARMSIAIELI NGIPRWIVIT LLAKAGCSIS LVRRVLELEK GVDVGQLSFT EKDIRNFLQL  180
KSSTNIEYDV LELLKVWKSL KDKDIDFQYD FTVDSCQRLE YIIWAFGDST HAYEIFGDVV  240
VFDTTYRLNR YEISVGVWIG VKIMAIMFSL SFIRLMKGKH LQTILTDQDL GLTEAIANEL  300
PHTKHVFCIW HITSKFSTWF SFPLGSRYMQ FKSEFHKIYE LGSIEEFEQQ WDELITKFDL  360
ELDRHIKLLY ANRASWALSY LKGYFFAGMT TTSHSESINA YLKKFLHART SSKDFVEQVG  420
AAVSIRNYAA EEAMMRQKYY NPQIKTFMPI EKNASTVLTL FAFKLLQNEM ILSVEYGLFS  480
NGDDSYIVRH YIKIDGGRFV FGIRYRRHCI RVLSSHNYFM LPDKYFLPRW RKENSLVLKF  540
SHIMNPPNDA NELQSFQSII RDLSLESMKS KGHLNCAKKE LERVLQVVQC LPDNELITEE  600
HRHVTVSQTT EHESSDDDYQ VENPQQSQIK GREEKG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016499085.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
TrEMBL	A0A1S4CD64	0.0	A0A1S4CD64_TOBAC; protein FAR1-RELATED SEQUENCE 11-like
STRING	XP_009596355.1	0.0	(Nicotiana tomentosiformis)
STRING	XP_008803488.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7183	7	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	1e-139	FAR1-related sequence 11