PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00724g00019.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 448aa MW: 51233.1 Da PI: 8.9987

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00724g00019.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.8	5e-20	57	137	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY +YA++ GFsvr+ + +ks++++ ++ + fvCskeg+r++++ k +tr + +a+ v+k+++gkw++++l+ eH Peinf101Scf00724g00019.1 57 NFYLDYAHRNGFSVRRGRLTKSRKDNLVIGQAFVCSKEGYRSKKNFK---------STRPQDDAMSYVTKKEEGKWVISRLVCEH 132 6**************************************997766.........8899999****************** PP FAR1 86 nHela 90 nHela Peinf101Scf00724g00019.1 133 NHELA 137 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.3E-17	57	137	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.868	204	240	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	7.5E-8	204	239	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.5E-4	215	242	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MEISHSDEQH INGVEVTMEG IESDTYCTTQ VDPYLGVENK REAYVGMEFS SLDDSFNFYL 60 DYAHRNGFSV RRGRLTKSRK DNLVIGQAFV CSKEGYRSKK NFKSTRPQDD AMSYVTKKEE 120 GKWVISRLVC EHNHELATPS SQKFLRSKRK KSEAQKNLID LLDDSGVRPD ELVFSQKFVS 180 EKIEVKDGMH IYNVHEFERQ KPTYIVSLDL ALKSAVCSCH KFEFMGILCR HVLMVFIKKK 240 IHSLPACYLL DRWTRNATKE KVDDSPNVTN KLRPALWFSN IMMHSIGLSE RAARSEKHYQ 300 FAHKKLLQLC EELDELPYEF EEGCVKGALV SESNLELNSI DQSHEIALLD PPRAATKGRP 360 RSLRMKSALE GTRKTQKNSS QRQKGQRKST KVTSKGRSSK SHAEVEQTNT GTPLSEPHTM 420 SYPEFYQGQV VNTGCAYTAS FTFKIVSH

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MEISHSDEQH INGVEVTMEG IESDTYCTTQ VDPYLGVENK REAYVGMEFS SLDDSFNFYL  60
DYAHRNGFSV RRGRLTKSRK DNLVIGQAFV CSKEGYRSKK NFKSTRPQDD AMSYVTKKEE  120
GKWVISRLVC EHNHELATPS SQKFLRSKRK KSEAQKNLID LLDDSGVRPD ELVFSQKFVS  180
EKIEVKDGMH IYNVHEFERQ KPTYIVSLDL ALKSAVCSCH KFEFMGILCR HVLMVFIKKK  240
IHSLPACYLL DRWTRNATKE KVDDSPNVTN KLRPALWFSN IMMHSIGLSE RAARSEKHYQ  300
FAHKKLLQLC EELDELPYEF EEGCVKGALV SESNLELNSI DQSHEIALLD PPRAATKGRP  360
RSLRMKSALE GTRKTQKNSS QRQKGQRKST KVTSKGRSSK SHAEVEQTNT GTPLSEPHTM  420
SYPEFYQGQV VNTGCAYTAS FTFKIVSH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025883762.1	2e-93	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025886302.1	2e-90	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A3Q7EY02	5e-90	A0A3Q7EY02_SOLLC; Uncharacterized protein
STRING	Solyc01g110070.1.1	4e-90	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA645	8	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	6e-18	FAR1 family protein