PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00610g08020.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 432aa MW: 49696.6 Da PI: 9.8933

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00610g08020.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	43.1	1.4e-13	48	98	1	54
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrt 54 +fY +YA++ GFs+r+ + +ks+++++i+ ++fvCskeg+r++++ k ++r+ Peinf101Scf00610g08020.1 48 NFYLDYAHRNGFSIRRGRVTKSRKDKSIIGQEFVCSKEGFRSKKNLK---SNRP 98 6*****************************************99877...2222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.0E-11	48	102	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.221	207	243	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
MENSNIDEQN EIGSDVDGTT QFVPSSGVEN HKDLYIGMEF SSLDDSFNFY LDYAHRNGFS 60 IRRGRVTKSR KDKSIIGQEF VCSKEGFRSK KNLKSNRPQD ITREVENSYG RKGKKSEAQK 120 NFIDLLDDSG VRPSKIASDF KTKSSMPKLK TLYPMEDEAA KAYTRKVFNI FQEELLLSQK 180 FVSEKVEVKD GINIYKVHEF GRQTPPYIVS LDLASKSAIC SCHKFEFMGI LCRDVLMIHS 240 LPSCYLLDRW TRNGTREKVD DSPNETKKLK PALLFNNIMM QSIGVSERAT WSGKHYQLAH 300 QRLLQLCEEL DDLEKDCVER NQVSESNLEL NSCDKSHKIT LLDPLRAATK GRPRSLRMKS 360 ALESKTKKKI LLRDRKEKRK IQNLRERRKG VVQTQTPKPN KKALQHDLSQ PFPQFHHGQV 420 ENTGRAYPSS FT

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

MENSNIDEQN EIGSDVDGTT QFVPSSGVEN HKDLYIGMEF SSLDDSFNFY LDYAHRNGFS  60
IRRGRVTKSR KDKSIIGQEF VCSKEGFRSK KNLKSNRPQD ITREVENSYG RKGKKSEAQK  120
NFIDLLDDSG VRPSKIASDF KTKSSMPKLK TLYPMEDEAA KAYTRKVFNI FQEELLLSQK  180
FVSEKVEVKD GINIYKVHEF GRQTPPYIVS LDLASKSAIC SCHKFEFMGI LCRDVLMIHS  240
LPSCYLLDRW TRNGTREKVD DSPNETKKLK PALLFNNIMM QSIGVSERAT WSGKHYQLAH  300
QRLLQLCEEL DDLEKDCVER NQVSESNLEL NSCDKSHKIT LLDPLRAATK GRPRSLRMKS  360
ALESKTKKKI LLRDRKEKRK IQNLRERRKG VVQTQTPKPN KKALQHDLSQ PFPQFHHGQV  420
ENTGRAYPSS FT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025883762.1	9e-90	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025886302.1	2e-87	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2G3CXF4	1e-129	A0A2G3CXF4_CAPCH; Uncharacterized protein
STRING	Solyc01g110070.1.1	3e-87	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA645	8	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-23	FAR1-related sequence 5