PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00582g03024.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 408aa MW: 47511.1 Da PI: 10.157

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00582g03024.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	80.3	3.5e-25	29	115	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY +YA++ GFsvr+ + +ks++++ i+ + fvCskeg+r+++ k ++r++ +tr gCk + v+k+++g+w + +l++ H Peinf101Scf00582g03024.1 29 NFYLDYAHRNGFSVRRGRVTKSRKDKLIIGQVFVCSKEGFRSKKYFK---NNRPQDVTREGCKVLIYVSKKEEGTWAIRRLVSGH 110 6***************************************99877...999**************************** PP FAR1 86 nHela 90 nHela Peinf101Scf00582g03024.1 111 NHELA 115 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-22	29	115	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.707	195	231	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.8E-4	206	233	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	4.0E-6	208	230	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MRTVPDLGVE NRREPYIGME FSSLDDSFNF YLDYAHRNGF SVRRGRVTKS RKDKLIIGQV 60 FVCSKEGFRS KKYFKNNRPQ DVTREGCKVL IYVSKKEEGT WAIRRLVSGH NHELATPSSQ 120 KFLRSKRKKS EAQKNLIDLL DDSGVRPAKA YTRKIFKIFR DELVFSQKFV SEKIEVKDGM 180 HIYKVHEFER QKPAYIVTLN VASRSVVCSC HKFEFMGILC RHVLMIFIKK KIHSLPTCYL 240 LDRWTRNATK EKVDDYPNET HKLRPAYWFN NIMMHSIGLS ERATRSEKHY QLAHQRLLQL 300 CEELDELSYE FEEDCAKVSE SNLELNSLEQ SHITLLDPPQ AATKGRPRSL RMKGGLESTW 360 KTQKSSSQRQ KGQRKSTKHK SKGTSSNSYV EAEQFNTTTL LSEAHAMX

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MRTVPDLGVE NRREPYIGME FSSLDDSFNF YLDYAHRNGF SVRRGRVTKS RKDKLIIGQV  60
FVCSKEGFRS KKYFKNNRPQ DVTREGCKVL IYVSKKEEGT WAIRRLVSGH NHELATPSSQ  120
KFLRSKRKKS EAQKNLIDLL DDSGVRPAKA YTRKIFKIFR DELVFSQKFV SEKIEVKDGM  180
HIYKVHEFER QKPAYIVTLN VASRSVVCSC HKFEFMGILC RHVLMIFIKK KIHSLPTCYL  240
LDRWTRNATK EKVDDYPNET HKLRPAYWFN NIMMHSIGLS ERATRSEKHY QLAHQRLLQL  300
CEELDELSYE FEEDCAKVSE SNLELNSLEQ SHITLLDPPQ AATKGRPRSL RMKGGLESTW  360
KTQKSSSQRQ KGQRKSTKHK SKGTSSNSYV EAEQFNTTTL LSEAHAMX

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025883762.1	1e-97	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025886302.1	4e-94	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2G3CXF4	1e-124	A0A2G3CXF4_CAPCH; Uncharacterized protein
STRING	Solyc01g110070.1.1	3e-94	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA645	8	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-23	FAR1-related sequence 5