PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00564g11006.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 568aa MW: 65239.9 Da PI: 7.9716

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00564g11006.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.5	1.3e-19	72	164	2	90
FAR1 2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkle 82 +Y ++Ak++GFsvr+++ s +++ ei++r++vC + g+++++k ++++++r r+++r +C+ak+ v ke +w v ++ Peinf101Scf00564g11006.1 72 CYVNFAKQIGFSVRRDRYFGSvEHHMEIYRRDYVCHRAGSPRPQKVANKERQRDRKSSRYNCNAKMCVAKEIidgITRWIVVYFD 156 7*************99998788999****************9999**************998756789*** PP FAR1 83 leHnHela 90 + HnHel Peinf101Scf00564g11006.1 157 NVHNHELL 164 ****96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.0E-17	72	164	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.2E-20	266	351	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 568 aa Download sequence Send to blast
MKVIKNILND STVGVSRSHC PCGDNECYIH GEIVGEITEM STEELRPGKI NIGNIDLHKG 60 KIFNSDNEAY NCYVNFAKQI GFSVRRDRYF GSVEHHMEIY RRDYVCHRAG SPRPQKVANK 120 ERQRDRKSSR YNCNAKMCVA KEIIDGITRW IVVYFDNVHN HELLNDKEVK YLPAYRNIDY 180 IDQKRISLLA KAGCPISLIR RVLELEKSSS TNIEYDALEL LKICKSLKDK DADFQYDFTV 240 DECQRLENII WAFGDSIRTY ELFGDVAVFY TTYRLNRYEI PLGVWVGVNN HGNTIFFGCV 300 LLRNEKASSF SWALKSFLRL MNGKHPQTIL TDQDLGLTEA IPNELPLTKH VGTAVSIRNQ 360 AGEEATMRQK YYNPQIKTFM PMEKHASKVL SPFAFKLLQD EMILSTEYGL FSNSDGSYIV 420 RHYSKTDGGR YVYWNPLEES LQSIVRDLTH ESMKTKGRLE YAKKELEKVL QIVQYLPENE 480 QVDEDQGHVS NSHSTEDNSL DEDYHIENSQ QSQTKGRKRG KRLVGGVEAA KKPRYCHVPN 540 CGGTGHDSRN CPLKNKSVEI PVSQSPHK

Sequence ? help Back to Top

Protein Sequence Length: 568 aa Download sequence Send to blast

MKVIKNILND STVGVSRSHC PCGDNECYIH GEIVGEITEM STEELRPGKI NIGNIDLHKG  60
KIFNSDNEAY NCYVNFAKQI GFSVRRDRYF GSVEHHMEIY RRDYVCHRAG SPRPQKVANK  120
ERQRDRKSSR YNCNAKMCVA KEIIDGITRW IVVYFDNVHN HELLNDKEVK YLPAYRNIDY  180
IDQKRISLLA KAGCPISLIR RVLELEKSSS TNIEYDALEL LKICKSLKDK DADFQYDFTV  240
DECQRLENII WAFGDSIRTY ELFGDVAVFY TTYRLNRYEI PLGVWVGVNN HGNTIFFGCV  300
LLRNEKASSF SWALKSFLRL MNGKHPQTIL TDQDLGLTEA IPNELPLTKH VGTAVSIRNQ  360
AGEEATMRQK YYNPQIKTFM PMEKHASKVL SPFAFKLLQD EMILSTEYGL FSNSDGSYIV  420
RHYSKTDGGR YVYWNPLEES LQSIVRDLTH ESMKTKGRLE YAKKELEKVL QIVQYLPENE  480
QVDEDQGHVS NSHSTEDNSL DEDYHIENSQ QSQTKGRKRG KRLVGGVEAA KKPRYCHVPN  540
CGGTGHDSRN CPLKNKSVEI PVSQSPHK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	515	522	GRKRGKRL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016499085.1	1e-166	PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
TrEMBL	A0A1J6K8V5	1e-173	A0A1J6K8V5_NICAT; Uncharacterized protein
STRING	XP_009596355.1	1e-151	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7183	7	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	1e-102	FAR1-related sequence 10