PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00537g14010.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 453aa MW: 50142.4 Da PI: 9.4236

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00537g14010.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	47.9	4.4e-15	41	123	1	91
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 +fY+++Ak+ GFs++k++ kk+ ++ + it r++ C k gk+++ +++ ++++Cka + ++ + + wev+++ Peinf101Scf00537g14010.1 41 DFYQDHAKKHGFSITKRSCKKQsSEYDLITGRRLSCHKAGKPARYQTS----------KKVDCKAGIYATLCSyRTSWEVKSVTV 115 6************99998875777889********9986655..........9**********9******* PP FAR1 84 eHnHelap 91 eHnH+l p Peinf101Scf00537g14010.1 116 EHNHDLEP 123 ***975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-11	41	123	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence Send to blast
MAGENNDPNV ATGEGPGINP RAPAGGPTVG MKFPSLEAMV DFYQDHAKKH GFSITKRSCK 60 KQSSEYDLIT GRRLSCHKAG KPARYQTSKK VDCKAGIYAT LCSYRTSWEV KSVTVEHNHD 120 LEPRLSWLMA AHRKVTPALK RDLVAADTAG VRPCRSQWVP VYLTDTFWAG MRSTQRSESM 180 HAFFDQFITS RTNLLTFVMQ YEVALKTKLD KELKEEESSK NTRLFSVTGS QWEEQLRAGL 240 TRNIYDMHRK QIQDSVSCNF VGFNAQDEVE TFSVSDTGMG LNYAGTEYIM TVMSDEFKRL 300 HGLKGIFYKC AERAIQSDKL TRKLGLELVA SFGKPNNDEP VPDDIHDVED HRSDVPILDP 360 RFLRSKGRPC LIRVRNNWNR RQRTYGTSRR GWGRSRVGAA GAGRGSGGVD ASNGNGGVDA 420 SRGNAAVDAT TSCVVNTTGG NSGVDASRGN CTI

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence Send to blast

MAGENNDPNV ATGEGPGINP RAPAGGPTVG MKFPSLEAMV DFYQDHAKKH GFSITKRSCK  60
KQSSEYDLIT GRRLSCHKAG KPARYQTSKK VDCKAGIYAT LCSYRTSWEV KSVTVEHNHD  120
LEPRLSWLMA AHRKVTPALK RDLVAADTAG VRPCRSQWVP VYLTDTFWAG MRSTQRSESM  180
HAFFDQFITS RTNLLTFVMQ YEVALKTKLD KELKEEESSK NTRLFSVTGS QWEEQLRAGL  240
TRNIYDMHRK QIQDSVSCNF VGFNAQDEVE TFSVSDTGMG LNYAGTEYIM TVMSDEFKRL  300
HGLKGIFYKC AERAIQSDKL TRKLGLELVA SFGKPNNDEP VPDDIHDVED HRSDVPILDP  360
RFLRSKGRPC LIRVRNNWNR RQRTYGTSRR GWGRSRVGAA GAGRGSGGVD ASNGNGGVDA  420
SRGNAAVDAT TSCVVNTTGG NSGVDASRGN CTI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7498	2	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	6e-13	FAR1 family protein