PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00527g03011.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family FAR1
Protein Properties Length: 547aa    MW: 63924.4 Da    PI: 8.1902
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00527g03011.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.61.7e-1738130290
                      FAR1   2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkle 82 
                               +Y ++Ak+vGF vr+++   s +    i+k+++vC + g++ ++k  +++++r r+++r++C+ak+ + ke      +w v  ++
  Peinf101Scf00527g03011.1  38 CYVSFAKRVGFLVRRDRYLGSeEYPMGIYKSDYVCHRAGTSYSQKIVEKERQRDRKSSRCNCTAKMSIAKELingIRRWIVVYFD 122
                               79**************998884455679**************99999999999****************998756789******* PP

                      FAR1  83 leHnHela 90 
                               + HnHel 
  Peinf101Scf00527g03011.1 123 NVHNHELL 130
                               ******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-1438130IPR004330FAR1 DNA binding domain
PfamPF105514.9E-23252340IPR018289MULE transposase domain
PROSITE profilePS5096610.658484522IPR007527Zinc finger, SWIM-type
PfamPF044342.6E-7492521IPR007527Zinc finger, SWIM-type
SMARTSM005751.4E-4497524IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
VGSTEIFSQD LGQENIDISN RDLHKGKVFN THDEAYTCYV SFAKRVGFLV RRDRYLGSEE  60
YPMGIYKSDY VCHRAGTSYS QKIVEKERQR DRKSSRCNCT AKMSIAKELI NGIRRWIVVY  120
FDNVHNHELL NEKEVRFLPA YCNIDIIDQK RITLLAKAGC SMSLIRRVLE LEKGVDVGKL  180
SFTEKDIRNF LQLESSTNIE YDALELLKVC KSLKDKDVDF QYDFTVDSCQ RLEHIIWAFG  240
YSTHAYEILD DVVVFDTTYR LNHYDMPLGV WIGVNNHGNS IFFGCVLLRN EKVSSFSWTL  300
KSFIRLMKGK NPQTILTDQD LGLTEAIANE LPHTKHAFSY YIQVLHLVFF SSWFKFDLEL  360
DRNIKLLYAN CASWALPYLK GYFFAGMTTT SRSKSINAYL KKFLHARTSL KEFVEQVWAA  420
VSIRNYAAKE AMMRQKYYNP QIKTFMPMEK NASTILTPFA FKLLQDEMIL SVEYGLFSNG  480
DDSYIVRHDS KTDEEVVQCS CQEFEFSRIL CRHCIRVLSS HNYFMLPDKY FLPKWRQENS  540
LVLKFFI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016499085.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
TrEMBLA0A1S4CD640.0A0A1S4CD64_TOBAC; protein FAR1-RELATED SEQUENCE 11-like
STRINGXP_009596355.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7183722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.11e-166FAR1-related sequence 11