PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00500g18025.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C3H
Protein Properties Length: 587aa    MW: 65914.9 Da    PI: 4.9481
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00500g18025.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH382.8e-12252274426
                               ---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                               e C ++++tG+Ck+G +CkF+H+
  Peinf101Scf00500g18025.1 252 EDCAYYMKTGICKFGLNCKFNHP 274
                               89********************8 PP
2zf-CCCH29.51.3e-09302324527
                               --SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                               +C++++  G CkyG+ Ck++H++
  Peinf101Scf00500g18025.1 302 ECKYYLTAGGCKYGNACKYNHSR 324
                               7********************95 PP
3zf-CCCH39.87.7e-13346368426
                               ---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                               ++C++++rtG CkyG++C+F+H+
  Peinf101Scf00500g18025.1 346 KECPYYMRTGSCKYGSNCRFHHP 368
                               68********************9 PP
4zf-CCCH277.5e-09479505127
                               --S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                               ++++ C+ff +tG Cky ++CkF+H++
  Peinf101Scf00500g18025.1 479 PGQPDCSFFVKTGDCKYKSTCKFHHPK 505
                               5789*********************96 PP
5zf-CCCH375.8e-12526551227
                               -S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                               +++ C+f++r+G+Ck+G+ CkF H++
  Peinf101Scf00500g18025.1 526 DQAVCSFYSRYGICKFGPACKFDHPE 551
                               6789********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.06E-6248278IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-5248275IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.788248276IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-10252274IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-4254274IPR000571Zinc finger, CCCH-type
SMARTSM003560.0027297324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.263297325IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-7302324IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-5302325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4303324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.361342370IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-6342369IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-7345370IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-10346368IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-6348367IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4478505IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.591478506IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-6480505IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-5483507IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5522549IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-6524551IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.14524552IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-9526551IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MELPIESELQ HMQTLNQPNP QNLGFLPDPK LQNPNHNPQN YDDDDDDEMV EIISEELQSL  60
VLKEAFNESK GDVEIGNYVL PVIESSGNGW GDDCYDDGDY YRSENVNGNE AVSKEWRLNE  120
NGDEAGWKGE GGFDGNGDEA GWNREGGFSG NDDEVSWRER GYNEKGGEAG WMERGFNENG  180
DEAGWKRDRE FNGNGDEASW RRDRGFNENG DEERWKKGGF NENGDGAGWK GERGFNGNNT  240
RRLNYPLRPD AEDCAYYMKT GICKFGLNCK FNHPSHRRNQ QWTKQKEESE ERTSEERAGQ  300
IECKYYLTAG GCKYGNACKY NHSRGKGISP VVDFNFLGLP VRPGDKECPY YMRTGSCKYG  360
SNCRFHHPDP STLTGGIPSS GYNNGGSAPV RSASYPTVSS WSSPKPLNET APFVPVVYPA  420
SRGIPSPSPQ WNGYQAPAYS TTEKSLPTPA FTMRDPSTKT NFYPRHQQPW IVEEYPERPG  480
QPDCSFFVKT GDCKYKSTCK FHHPKTQISK TNSIVLNDKG LPLRPDQAVC SFYSRYGICK  540
FGPACKFDHP EHYDISDSST GSMFDQPSFG NSATTDGTRM ARKEVVL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803257.10.0PREDICTED: zinc finger CCCH domain-containing protein 43-like isoform X1
RefseqXP_016462729.10.0PREDICTED: zinc finger CCCH domain-containing protein 43-like isoform X1
SwissprotQ9STM41e-109C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A1S3ZEF10.0A0A1S3ZEF1_TOBAC; zinc finger CCCH domain-containing protein 43-like isoform X1
TrEMBLA0A1U7YGM00.0A0A1U7YGM0_NICSY; zinc finger CCCH domain-containing protein 43-like isoform X1
STRINGXP_009803257.10.0(Nicotiana sylvestris)
STRINGPGSC0003DMT4000696260.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44682343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-110C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]