PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00421g32002.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 459aa MW: 51213.9 Da PI: 6.1992

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00421g32002.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	26.3	2.5e-08	39	93	40	91
FAR1 40 kreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 +++++k+ + ++r + ++++ gCka + ++ + + wev+++ eHnH+l p Peinf101Scf00421g32002.1 39 ESDDDKSGssRARNRGRDQNSNNGCKAGIYATLCTdRTSWEVQSVTVEHNHDLEP 93 3333333333556666888999**********9999************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.5E-6	23	93	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.6E-23	213	305	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
MYKPALPELN VVVEIDYSTC SSDSGDAYET KVVVSDDDES DDDKSGSSRA RNRGRDQNSN 60 NGCKAGIYAT LCTDRTSWEV QSVTVEHNHD LEPQFTSLMP SRMKLSPALR RNFVPANTAG 120 VSPSRSFRTM EILNGGAENM GCWPSDSRKG VDQDRRLKLN PGDAEVLNQF CQRMHAMDKK 180 FVYKMDLDNE GRLRNVMWIH PQANLAYQQF RDVVYFDSSY KVNQETMPFA TVVGVNHHNQ 240 SIILGAGLLS SEDITTYRWL FGSWVRCMGE IKTRAIVTDQ CESIGAAIRE EFPTTTHRLF 300 LWRMLSKMSD EFQRLQGLKG IFYQCAERAI QSDQLTDKLK LDLMANFYKP NNDDPIPDDI 360 HDVEDHRSDA PILDANFLRI EGRPCLVHVR DKWNKRRRAN GSRGGRGGSR GGASGAGRGS 420 GGVDASDGNY GDDAGRGNGA VDATTXAVDA TTGMLKNEF

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

MYKPALPELN VVVEIDYSTC SSDSGDAYET KVVVSDDDES DDDKSGSSRA RNRGRDQNSN  60
NGCKAGIYAT LCTDRTSWEV QSVTVEHNHD LEPQFTSLMP SRMKLSPALR RNFVPANTAG  120
VSPSRSFRTM EILNGGAENM GCWPSDSRKG VDQDRRLKLN PGDAEVLNQF CQRMHAMDKK  180
FVYKMDLDNE GRLRNVMWIH PQANLAYQQF RDVVYFDSSY KVNQETMPFA TVVGVNHHNQ  240
SIILGAGLLS SEDITTYRWL FGSWVRCMGE IKTRAIVTDQ CESIGAAIRE EFPTTTHRLF  300
LWRMLSKMSD EFQRLQGLKG IFYQCAERAI QSDQLTDKLK LDLMANFYKP NNDDPIPDDI  360
HDVEDHRSDA PILDANFLRI EGRPCLVHVR DKWNKRRRAN GSRGGRGGSR GGASGAGRGS  420
GGVDASDGNY GDDAGRGNGA VDATTXAVDA TTGMLKNEF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7498	2	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	1e-40	FAR1 family protein