PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00368g05012.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family FAR1
Protein Properties Length: 636aa    MW: 73375.8 Da    PI: 6.2588
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00368g05012.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR189.64.4e-28129215190
                      FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                               +fY +YA++ GFsvr+++ ++s+++++i+ ++fvCskeg+r++++ +   ++r+r etr gCk ++ ++k+++gkwevt+l ++H
  Peinf101Scf00368g05012.1 129 EFYLNYAHRSGFSVRRNRINRSRKDNSIIGQEFVCSKEGFRSKKSLE---SNRQRDETREGCKVMIYLSKKEEGKWEVTRLISDH 210
                               6******************************************9877...9999******************************* PP

                      FAR1  86 nHela 90 
                               nHela
  Peinf101Scf00368g05012.1 211 NHELA 215
                               ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.8E-25129215IPR004330FAR1 DNA binding domain
PfamPF044347.0E-8384420IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.029384420IPR007527Zinc finger, SWIM-type
SMARTSM005759.9E-5395422IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MVPESDLDDD VDLSELDLDE EVEKRKKSKQ KVSDTMIRIF LPHYVDLPES DLDEDVNLPE  60
LDLDEDIDLP ELDLDEEDNQ ETSNTLKENR EGVSASLEEL ESDMNAMVDE EPREPYIGMD  120
FPSLDIAFEF YLNYAHRSGF SVRRNRINRS RKDNSIIGQE FVCSKEGFRS KKSLESNRQR  180
DETREGCKVM IYLSKKEEGK WEVTRLISDH NHELASPHSR KFLRSKRKKS EAQKNLIDLL  240
DTSGIRPSKI ASLVEEDIHN SYVRTTFCAG MSTTQRGESM NKFFKDYLNS ATPMSVFVTQ  300
YDKAVDARYD KIREKEFKTK SSIAVLKTLY PMEDEAAKAY TRKMFRIFRD ELTLSQKFVS  360
EKIEVKDGIY IYNVHEFQKH TPAYVVRLNL ELKNAVCSCH KFEFMGILCR HVLMVFIKKN  420
IHSLPPCYLL DRWTRYATKE KVDDVLNEKL HVNNLTPSTT WFNNIMMHSL GLSERATRSE  480
KHYKFTYQRL VELSKELDEL PYELENDDDC GRQVNDSNME SNLGNLSQNI TLLDPPCAAT  540
KGRPRSLRMR GGLESAHKVK RSSSQKRKGK IKSNKKVKGM STSSHVDLEP KSTTPSSTAP  600
TMQFQPHTES FHGQNGDVYS TSFTLIEKAI LGGVED
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025886302.11e-175protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2G3CXF40.0A0A2G3CXF4_CAPCH; Uncharacterized protein
STRINGSolyc01g110070.1.11e-176(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA645860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-40FAR1-related sequence 5