PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00338g05005.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family FAR1
Protein Properties Length: 263aa    MW: 30230.1 Da    PI: 8.4617
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00338g05005.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.61.2e-1954139290
                      FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                                Yn+YA   GF +rk +++++ rn+e t+  f Cs+egk+ e+++  +++ r+r   r+gC a++k k + +g+wev ++  eHn
  Peinf101Scf00338g05005.1  54 AYNSYAVAKGFGIRKGAKTYN-RNNELTRCLFLCSCEGKSPENSNY-QERLRQRLGYRCGCMARIKFKIS-NGVWEVFEICDEHN 135
                               5****************9999.5556****************9999.99999****************99.************** PP

                      FAR1  87 Hela 90 
                               H++ 
  Peinf101Scf00338g05005.1 136 HPMI 139
                               *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-1654139IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MEASLASNKN FVYEDLNVND ENCPAVVHTV STINNDFACK IGMKFNTEDE SYEAYNSYAV  60
AKGFGIRKGA KTYNRNNELT RCLFLCSCEG KSPENSNYQE RLRQRLGYRC GCMARIKFKI  120
SNGVWEVFEI CDEHNHPMIE ENLRHFIPSG RKLTDDVESE EIARKHLYQA RVEIMKLQSE  180
LSVEGTHKSY PKFSISIEPS SSINDQVLDP VKKKGRGNGY GRLKPKTEQR KKRAPQKTFK  240
ARATEQHDQE SSRLSFEVCT LNY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211232KKKGRGNGYGRLKPKTEQRKKR
2212223KKGRGNGYGRLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019266793.12e-77PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A1S3ZUA71e-72A0A1S3ZUA7_TOBAC; Uncharacterized protein
STRINGXP_009628526.12e-74(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1726931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.15e-14FAR1-related sequence 10