PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00268g08003.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 741aa MW: 86332.7 Da PI: 9.3042

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00268g08003.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	81.8	1.2e-25	55	141	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY +YA++ GFsvr+++ ++s++ ++i+ ++fvCskeg+r++++ + ++r+r etr gCk ++ ++k+++gk evt+l ++H Peinf101Scf00268g08003.1 55 EFYLNYAHRSGFSVRRNRINRSRKYNSIIGQEFVCSKEGFRSKKSLE---SNRQRDETREGCKVMIYLSKKEEGKLEVTRLISDH 136 6****************************************9877...9999*************************** PP FAR1 86 nHela 90 nHela Peinf101Scf00268g08003.1 137 NHELA 141 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.6E-23	55	141	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.3E-35	263	357	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.029	544	580	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	8.5E-8	544	580	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.9E-5	555	582	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 741 aa Download sequence Send to blast
MLQDNQETSN TLKENREGVS ASLEELESDM NAMVDEEPRE PYIGMDFPSL DIAFEFYLNY 60 AHRSGFSVRR NRINRSRKYN SIIGQEFVCS KEGFRSKKSL ESNRQRDETR EGCKVMIYLS 120 KKEEGKLEVT RLISDHNHEL ASPHSRKFLR SKRKKSEAQK NLIDLLDTSG IRPSKIASVL 180 INQAGGVENL NLTGRDIQNY LSTKRQNNLE KGDAQLMLKY FQKRQSESPG FFYAIQMDVE 240 SHLANCFWVD ARSRVAYKNF GEVVVFDPTY LTNKYKMPFV PFTGVNNHHQ SILFGCALIL 300 DETQETFEWL LRTWQEAMFG VAPRTIITDQ DQTIINAVAN VFPNSAHHFC MWHIEKKIPE 360 YLSHIYHEFG DFKSKFSKCL HDTTTPEEFE SNWTDILHKY NLVENSWLKK IYTIRKKWIP 420 AYVRTMFCAG MSTTQRGESM NKFFKDYLNS ATPMSVFVTQ FDKAVDVRYD KIREKEFKTK 480 SSIAVLKTLY PMEDEAAKAY TRKMFRIFRD ELTLSQKFVS EKIEVKDGIY IYNVHEFKKH 540 SPAYVVRLNL ELKNAVCSCH KFEFMGILCR HVLMVFIKKN IHSLPPCYLL DPWTRYATKE 600 KVDDILNGKL HVNNLTPSTT WFNNIMMHSL ELSERATRSE KHYKFTYQRL VELSKELDEL 660 PYELENDDDC GRQVNDSNME SNLGNLSQNI TLLDPPCAAT KGRPRSLRMR GGLESAHKVK 720 RSSSQKQKGK IKSSKKVKGM R

Sequence ? help Back to Top

Protein Sequence Length: 741 aa Download sequence Send to blast

MLQDNQETSN TLKENREGVS ASLEELESDM NAMVDEEPRE PYIGMDFPSL DIAFEFYLNY  60
AHRSGFSVRR NRINRSRKYN SIIGQEFVCS KEGFRSKKSL ESNRQRDETR EGCKVMIYLS  120
KKEEGKLEVT RLISDHNHEL ASPHSRKFLR SKRKKSEAQK NLIDLLDTSG IRPSKIASVL  180
INQAGGVENL NLTGRDIQNY LSTKRQNNLE KGDAQLMLKY FQKRQSESPG FFYAIQMDVE  240
SHLANCFWVD ARSRVAYKNF GEVVVFDPTY LTNKYKMPFV PFTGVNNHHQ SILFGCALIL  300
DETQETFEWL LRTWQEAMFG VAPRTIITDQ DQTIINAVAN VFPNSAHHFC MWHIEKKIPE  360
YLSHIYHEFG DFKSKFSKCL HDTTTPEEFE SNWTDILHKY NLVENSWLKK IYTIRKKWIP  420
AYVRTMFCAG MSTTQRGESM NKFFKDYLNS ATPMSVFVTQ FDKAVDVRYD KIREKEFKTK  480
SSIAVLKTLY PMEDEAAKAY TRKMFRIFRD ELTLSQKFVS EKIEVKDGIY IYNVHEFKKH  540
SPAYVVRLNL ELKNAVCSCH KFEFMGILCR HVLMVFIKKN IHSLPPCYLL DPWTRYATKE  600
KVDDILNGKL HVNNLTPSTT WFNNIMMHSL ELSERATRSE KHYKFTYQRL VELSKELDEL  660
PYELENDDDC GRQVNDSNME SNLGNLSQNI TLLDPPCAAT KGRPRSLRMR GGLESAHKVK  720
RSSSQKQKGK IKSSKKVKGM R

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025886302.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	D5MNY6	0.0	D5MNY6_SOLLC; Transposon-like element Lyt2-2 DNA
STRING	Solyc01g110070.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA645	8	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-150	FAR1-related sequence 5