PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00265g05022.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 698aa MW: 80655.9 Da PI: 6.8094

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00265g05022.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.4	2.7e-24	71	162	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkle 82 ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke ++w+v++++ Peinf101Scf00265g05022.1 71 EYYSNFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKEIvdgVAQWYVSQFS 154 69******************8888.**************************************998766789*** PP FAR1 83 leHnHela 90 + HnHel Peinf101Scf00265g05022.1 155 NVHNHELL 162 ****96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.5E-22	71	162	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.7E-24	294	386	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.965	572	607	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.8E-6	580	606	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.5E-4	582	609	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 698 aa Download sequence Send to blast
MAAKPLSNIW IRKQQCPCGD WKCYIKADGD DQPVNISQTT KCETTSLSTS LNVVFTPYVG 60 QIFKSDDEAF EYYSNFARKN GFSIRKARST ESQNLGIYRR DFVCYRSGFN QPRKKANVEH 120 PRDRKSVRCG CDAKLYLTKE IVDGVAQWYV SQFSNVHNHE LLEDDQVRLL PAYRKIQEAD 180 QERILLLSKA GFPVNRIVKV LELEKGVQPG QLPFIEKDVR NFVRTCKKTV QENDALITEK 240 RENDLLELLE ACKASEQKEE GFVYSFSTDE NGRVENIAWS YGHSRRAYSF FGDVVTFDTT 300 YRSITYNMLL GVWFGIDNHG NALFLGCVLL QDETSQSFSW ALQSFVQFMR GRQPQTIVTD 360 IDPGLRDAMA SEMPNTKHVI CLWQVLSKLS SWFSLPLGLQ YADFKSEFDI LCRLENVEDF 420 EHQWNHLVAR FGLGSDKHIA LLFSYRTSWP ISYMRNFFLA QTMTIEYSKL VETFMKNILS 480 PQSSILLFFE QVKSSFTVCL VSNFGNHKNE SQLYKPAKTC LPLEEHARSV LTPYAFSVIQ 540 HEIVLSMQYA ITEMANSSFL VRHYKKMEAE CLVIWIPEDE QVHCSCKEFE HSGILCRHSI 600 RVLVSKNYFQ IPEKYFPLRW RLESSLDPLD NSVIQSSANE YSQVFHALSG SLYSESLISK 660 ERFTYVHREL KQLLEHVQNM PTVDEVALRS APINVSEL

Sequence ? help Back to Top

Protein Sequence Length: 698 aa Download sequence Send to blast

MAAKPLSNIW IRKQQCPCGD WKCYIKADGD DQPVNISQTT KCETTSLSTS LNVVFTPYVG  60
QIFKSDDEAF EYYSNFARKN GFSIRKARST ESQNLGIYRR DFVCYRSGFN QPRKKANVEH  120
PRDRKSVRCG CDAKLYLTKE IVDGVAQWYV SQFSNVHNHE LLEDDQVRLL PAYRKIQEAD  180
QERILLLSKA GFPVNRIVKV LELEKGVQPG QLPFIEKDVR NFVRTCKKTV QENDALITEK  240
RENDLLELLE ACKASEQKEE GFVYSFSTDE NGRVENIAWS YGHSRRAYSF FGDVVTFDTT  300
YRSITYNMLL GVWFGIDNHG NALFLGCVLL QDETSQSFSW ALQSFVQFMR GRQPQTIVTD  360
IDPGLRDAMA SEMPNTKHVI CLWQVLSKLS SWFSLPLGLQ YADFKSEFDI LCRLENVEDF  420
EHQWNHLVAR FGLGSDKHIA LLFSYRTSWP ISYMRNFFLA QTMTIEYSKL VETFMKNILS  480
PQSSILLFFE QVKSSFTVCL VSNFGNHKNE SQLYKPAKTC LPLEEHARSV LTPYAFSVIQ  540
HEIVLSMQYA ITEMANSSFL VRHYKKMEAE CLVIWIPEDE QVHCSCKEFE HSGILCRHSI  600
RVLVSKNYFQ IPEKYFPLRW RLESSLDPLD NSVIQSSANE YSQVFHALSG SLYSESLISK  660
ERFTYVHREL KQLLEHVQNM PTVDEVALRS APINVSEL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975446	0.0	HG975446.1 Solanum pennellii chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006357635.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_006357636.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_006357637.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A0V0IQ62	0.0	A0A0V0IQ62_SOLCH; Putative FAR1-related sequence 10-like
STRING	XP_009624952.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7532	19	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]