PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00258g22008.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 476aa MW: 54623.2 Da PI: 9.0351

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00258g22008.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	35.5	3.2e-11	52	134	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY +YA++ + v+ s +++ ++ +k+ fv +k + +++ r ++tr gCk ++ ++k+++gkwevt+l ++H Peinf101Scf00258g22008.1 52 EFYLNYAHRSVYVVVGSIDQEK-ITQLAVKSLFVQKK-DFVQKKV-----LRVIGNKTREGCKVMIYLSKKEEGKWEVTRLISDH 129 5899999998887776655554.55555555555433.3333333.....34578899************************* PP FAR1 86 nHela 90 nHela Peinf101Scf00258g22008.1 130 NHELA 134 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-8	52	134	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.668	230	266	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.7E-4	232	259	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
DNQKTSNTLK ENREGVGASL EELQSDMNAM VDEEPREPYI GMDFPSLDIA FEFYLNYAHR 60 SVYVVVGSID QEKITQLAVK SLFVQKKDFV QKKVLRVIGN KTREGCKVMI YLSKKEEGKW 120 EVTRLISDHN HELASPHSRK FLRSKRKKSE AQKNLIDLLV TSGIRSSKIA SVLINQAGGV 180 ENLNLTAKAY TRKMFRIFRD ELTLSQKFIE VKDGIYIYNV YEFQKHTPAY VVRLNLELKN 240 VVCSCHKFEF MEILCRHVLM KNIHSLPPCY LLDRWTRYAT KEKVDDVLNE KLHVNNLNPS 300 STWFNNIMMH SLGLSERATR SEKHYKFTYQ RLVELSKELD ELPYELENDD DCGRQVNDSN 360 MESNLGNLSQ NITLLDPPCA ATKGRPRSLR MRGGLESANK VKRSSSEKQK GKTKVVRNTS 420 SHVDLEPQST RTPSSTAPTM QFQPYTESFH GQNGDVYSTS FTDLMRAASY PVGQDC

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

DNQKTSNTLK ENREGVGASL EELQSDMNAM VDEEPREPYI GMDFPSLDIA FEFYLNYAHR  60
SVYVVVGSID QEKITQLAVK SLFVQKKDFV QKKVLRVIGN KTREGCKVMI YLSKKEEGKW  120
EVTRLISDHN HELASPHSRK FLRSKRKKSE AQKNLIDLLV TSGIRSSKIA SVLINQAGGV  180
ENLNLTAKAY TRKMFRIFRD ELTLSQKFIE VKDGIYIYNV YEFQKHTPAY VVRLNLELKN  240
VVCSCHKFEF MEILCRHVLM KNIHSLPPCY LLDRWTRYAT KEKVDDVLNE KLHVNNLNPS  300
STWFNNIMMH SLGLSERATR SEKHYKFTYQ RLVELSKELD ELPYELENDD DCGRQVNDSN  360
MESNLGNLSQ NITLLDPPCA ATKGRPRSLR MRGGLESANK VKRSSSEKQK GKTKVVRNTS  420
SHVDLEPQST RTPSSTAPTM QFQPYTESFH GQNGDVYSTS FTDLMRAASY PVGQDC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025883762.1	1e-113	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025886302.1	1e-110	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A3Q7EY02	1e-116	A0A3Q7EY02_SOLLC; Uncharacterized protein
STRING	Solyc01g110070.1.1	1e-118	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA645	8	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-16	FAR1-related sequence 5