PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00256g02023.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family Trihelix
Protein Properties Length: 319aa    MW: 36343.4 Da    PI: 5.1018
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00256g02023.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.32.2e-1442126286
                  trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                               W+++e+  L++a  ++  r +r++l+   W+ev++++ +  ++er+ +qC+++++ l+k+ykk+     +    ++s+++yf+++
  Peinf101Scf00256g02023.1  42 WSEHETFILLDAWGDRFLRHGRKSLRSEEWQEVAERVsQGSKIERTDTQCRNRLDTLKKKYKKEMMKLAET-GSATSKWVYFRKM 125
                               *************************************555678*********************9999985.667779******* PP

                  trihelix  86 e 86 
                               +
  Peinf101Scf00256g02023.1 126 D 126
                               8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.2844099IPR017877Myb-like domain
PfamPF138374.1E-2141128No hitNo description
Gene3DG3DSA:1.10.10.607.7E-542105IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDDIQDNGRY PPNPYGMNQA PSTAATAAPK LSFGGRNPLS DWSEHETFIL LDAWGDRFLR  60
HGRKSLRSEE WQEVAERVSQ GSKIERTDTQ CRNRLDTLKK KYKKEMMKLA ETGSATSKWV  120
YFRKMDMLLT STSPQQAGIS CGMDSGEYVF MTPKAYLNRA NGFDEARDSP ANSEESADGE  180
EDDSEDLPPK RSRNGQSRRG GASSFKLIAD SIHKFSEIYV KIENSKRQQM LELEKMRMDF  240
HRELELQKRQ IVERARAEIA RIRQGSDEEN DKSAENSSSV HEEPDMGTKF SDTTPSGVLW  300
DLDPPPYYNC VVVDIPNDF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755240.0HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004252336.11e-148trihelix transcription factor ASIL1
RefseqXP_004252337.11e-148trihelix transcription factor ASIL1
TrEMBLA0A3Q7J9R01e-155A0A3Q7J9R0_SOLLC; Uncharacterized protein
STRINGSolyc12g043090.1.11e-147(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72302431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.17e-62Trihelix family protein