PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00239g06007.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 542aa MW: 61266.5 Da PI: 6.2601

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00239g06007.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	31.6	5.3e-10	143	224	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 +fY++ Ak GF +++++skk+k ++ +++C + gkr++ +++ ++++C k++ ++ +w+v++++ + Peinf101Scf00239g06007.1 143 SFYKAQAKLKGFCIVRRSSKKHKISRVRNYVHYCCDRTGKRDNATTT----------KKIQCPTKVNANLAAdGITWVVNSVNIN 217 59**********************999*******9997766..........9*********96779***** PP FAR1 85 HnHelap 91 nH+l p Peinf101Scf00239g06007.1 218 NNHDLEP 224 **975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.6E-7	143	224	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.5E-28	345	436	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence Send to blast
MQMPQGPPIP QAAAAVDVPI PQAVVDAPIP EAAVDVPIPQ AVVDAPIPEH LCFPKLKQCW 60 SISDILTSVN GDEAEGVEGF DVEVEGGDED VEVGGDVIEG CDEDVEGGNE GVEGSDEDIE 120 YHHNVRLGPQ SGMTIDSFEE FHSFYKAQAK LKGFCIVRRS SKKHKISRVR NYVHYCCDRT 180 GKRDNATTTK KIQCPTKVNA NLAADGITWV VNSVNINNNH DLEPDLSRLM PGHRHMSKSL 240 KRSLSATDRA GIRPSKSIRA LQSQLDGPEK LGCSQEYCRN FINNSRKLNL GPGDAASIRQ 300 FFCDMQTKDN DFFHLMDIND EGRLRNLIWV HPQGKAAYQE FHDLICVDTT YLVNRYDMPF 360 CSFISINHHC QSILLGCALV SKEDISTHRW LFSTWVNAMG GIEPLCLLTD QDESIMAIVR 420 ELWPNTIHRF CIWHIFAKLP IMFKRHRSYF DIKTEFTAIS SGQDTDYKET NGWTSCMVKR 480 KSGSMHALFN GYINSQSTWK SFVEQYEVAL REKHEKELKK ELAARTKIIK CYSGFLWEKQ 540 LE

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence Send to blast

MQMPQGPPIP QAAAAVDVPI PQAVVDAPIP EAAVDVPIPQ AVVDAPIPEH LCFPKLKQCW  60
SISDILTSVN GDEAEGVEGF DVEVEGGDED VEVGGDVIEG CDEDVEGGNE GVEGSDEDIE  120
YHHNVRLGPQ SGMTIDSFEE FHSFYKAQAK LKGFCIVRRS SKKHKISRVR NYVHYCCDRT  180
GKRDNATTTK KIQCPTKVNA NLAADGITWV VNSVNINNNH DLEPDLSRLM PGHRHMSKSL  240
KRSLSATDRA GIRPSKSIRA LQSQLDGPEK LGCSQEYCRN FINNSRKLNL GPGDAASIRQ  300
FFCDMQTKDN DFFHLMDIND EGRLRNLIWV HPQGKAAYQE FHDLICVDTT YLVNRYDMPF  360
CSFISINHHC QSILLGCALV SKEDISTHRW LFSTWVNAMG GIEPLCLLTD QDESIMAIVR  420
ELWPNTIHRF CIWHIFAKLP IMFKRHRSYF DIKTEFTAIS SGQDTDYKET NGWTSCMVKR  480
KSGSMHALFN GYINSQSTWK SFVEQYEVAL REKHEKELKK ELAARTKIIK CYSGFLWEKQ  540
LE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019235590.1	1e-129	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1301	9	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	3e-55	FAR1 family protein