PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00235g07012.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 313aa MW: 35920.9 Da PI: 9.7898

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00235g07012.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	39.5	1.9e-12	41	123	1	91
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 +fY++ Ak+ GF+++k++ kk+ ++ + it r++ C k gk+++ +++ +++Cka ++ + + w+v+++ Peinf101Scf00235g07012.1 41 DFYQDRAKKHGFRITKRSCKKQsSEYNLITARRLSCDKVGKPARYQTS----------RKVDCKAGSYATLCSdRTSWKVQSVTV 115 6************99998875677889********9987655..........89*******99899***** PP FAR1 84 eHnHelap 91 eHnH+l p Peinf101Scf00235g07012.1 116 EHNHDLEP 123 ***975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-8	41	123	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MAGENNDPSI ATGEGPGINP RAPAGGLTVG MKFPSLEAMV DFYQDRAKKH GFRITKRSCK 60 KQSSEYNLIT ARRLSCDKVG KPARYQTSRK VDCKAGSYAT LCSDRTSWKV QSVTVEHNHD 120 LEPRLSWLMA AHRKVTPALK RDLVAADIAG VRPCRSFRTM EIMNGGTENM GCLPRDCRNF 180 INQHRKMRLK HGDAEALQIF FERRWAQFIC DPRLRENQWL DDIYSIRSQW VPVYLTDTFW 240 AGMRSTQRSE SMHAFFDQFI TSRTNLLTFV MQYEVALKTK LDKELKEEES SKNTXCCWVG 300 TPKHVGVRGT VWY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7498	2	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-18	FAR1-related sequence 5