PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00217g04011.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C3H
Protein Properties Length: 437aa    MW: 47254.8 Da    PI: 8.6932
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00217g04011.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.81e-094874127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                              ++ + C+++ +tGtC yG+ C+++H+p
  Peinf101Scf00217g04011.1 48 PGVPDCSYYIKTGTCGYGAICRYNHPP 74
                              5789*********************96 PP
2zf-CCCH37.53.9e-12100124327
                               S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                               ++ C++++rtG Ck+G+ CkF+H++
  Peinf101Scf00217g04011.1 100 EPTCQYYLRTGNCKFGAACKFHHPR 124
                               789********************96 PP
3zf-CCCH32.41.5e-10148170527
                               --SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                               +C+++++tG+Ck+G +Ck++H++
  Peinf101Scf00217g04011.1 148 ECSYYLKTGHCKFGITCKYHHPQ 170
                               7********************97 PP
4zf-CCCH37.54.1e-12300326127
                               --S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                               ++++ C+++++tG Ck+G++C+++H+p
  Peinf101Scf00217g04011.1 300 PGQPTCQYYMKTGDCKFGSSCRYHHPP 326
                               57899********************97 PP
5zf-CCCH27.84.5e-09347372227
                               -S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                               +  +C+f++  G+Ck+G  CkF H++
  Peinf101Scf00217g04011.1 347 GVQPCSFYLLKGFCKFGRACKFDHPM 372
                               6789********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.0374775IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-44774IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-64974IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-55175IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.9997125IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-697124IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9100124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-6100125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4103124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.446143171IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4143170IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5146171IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-8148170IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.239299327IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-6299326IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-9301326IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-6303327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4305325IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.587345373IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-6345372IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5347373IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-6347372IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-4349370IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MELYGRSNGS NNGSQSDHHS EWLPQTGLDE SSMQRMGLWG REIYPERPGV PDCSYYIKTG  60
TCGYGAICRY NHPPDRSSVT NLSGGKMQLG GVEYPERLGE PTCQYYLRTG NCKFGAACKF  120
HHPRNLGGSL INITLNTCGY PLRPGEMECS YYLKTGHCKF GITCKYHHPQ PAGISVPAPA  180
RPFYPTVQPL AAPAEEYHST STGFKVAKPP LLPGSYVPSA YGPVLLHPGV VAIQNWSPYS  240
GPASPALSPG AQPSAGVTSI YGISQLASST HVFAGPYSPL YSAASPSSKT QKEKSFPERP  300
GQPTCQYYMK TGDCKFGSSC RYHHPPDWIA SKTNCAVGPL GLPLRPGVQP CSFYLLKGFC  360
KFGRACKFDH PMGTVSYSSS VSALPDLPIA PYMLRSSFTF APTLMSELQP GFISGSKVET  420
SLSRAPSTLK VQLVELT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776613.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X1
RefseqXP_016506824.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X1
SwissprotQ84W911e-158C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A1S4D0M40.0A0A1S4D0M4_TOBAC; zinc finger CCCH domain-containing protein 32-like isoform X1
TrEMBLA0A1U7WD870.0A0A1U7WD87_NICSY; zinc finger CCCH domain-containing protein 32-like isoform X1
STRINGXP_009776613.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66222034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-155C3H family protein