PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00181g13006.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family FAR1
Protein Properties Length: 310aa    MW: 35610.2 Da    PI: 9.3733
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00181g13006.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.41.4e-1954139290
                      FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                                Yn+YA e GF vrk  ++++ rn+ it+  f Cs+egk+++ +   e+++r+r e r+gC a++k k + +g wev +++  H+
  Peinf101Scf00181g13006.1  54 AYNSYAVEKGFGVRKGVKTHN-RNKVITRCLFLCSCEGKSSKLSPY-EERKRKRLEYRCGCMARIKFKIS-NGIWEVCEFNDMHS 135
                               5***************99998.8888****************9999.9999*****************99.************** PP

                      FAR1  87 Hela 90 
                               H++ 
  Peinf101Scf00181g13006.1 136 HPMI 139
                               *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-1654139IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEDLNVENGL SNQEDYTVKD QQLFTKAHNV CNINKNFVFE IGMKFGSEEE SYNAYNSYAV  60
EKGFGVRKGV KTHNRNKVIT RCLFLCSCEG KSSKLSPYEE RKRKRLEYRC GCMARIKFKI  120
SNGIWEVCEF NDMHSHPMIE DNLRHFIQSA ANDVDSEKIA RKYLYQANVE ITRFQSKLYA  180
EGRDKGVHKF NSIVDPCQDS KDIILDPIKK KGKGKGYKRL KPNIEKGRKK ASQKTLKDKV  240
GHPNEQQSFS TMAATVNAQS SSMSQTFPSF EFYEESSNTF TQLLTQDSIL WTTGYNQNRG  300
LNNMQSNIGI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019266793.17e-65PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2052822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.19e-08FAR1-related sequence 10